Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 AP000347.1-202ENST00000435868 847 ntBASIC12.81□□□□□ -0.36
CCDC140Q96MF4 POU5F1P6-201ENST00000466990 990 ntBASIC12.81□□□□□ -0.36
CCDC140Q96MF4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 PGAM5P1-201ENST00000518923 814 ntBASIC12.81□□□□□ -0.36
CCDC140Q96MF4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 AP002472.1-201ENST00000577490 586 ntBASIC12.81□□□□□ -0.36
CCDC140Q96MF4 AL671883.3-201ENST00000603274 991 ntBASIC12.81□□□□□ -0.36
CCDC140Q96MF4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 MTHFR-217ENST00000641820 1569 ntBASIC12.81□□□□□ -0.36
CCDC140Q96MF4 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 AC016027.1-202ENST00000607927 1699 ntBASIC12.8□□□□□ -0.36
CCDC140Q96MF4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 TNRC18P3-201ENST00000441896 2691 ntBASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 AC040169.1-201ENST00000565382 521 ntBASIC12.8□□□□□ -0.36
CCDC140Q96MF4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 AL078644.1-201ENST00000609881 752 ntBASIC12.8□□□□□ -0.36
CCDC140Q96MF4 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC140Q96MF4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC12.79□□□□□ -0.36
CCDC140Q96MF4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms