Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 GPAA1P2-202ENST00000606848 1787 ntBASIC17.91■□□□□ 0.46
CCDC42Q96M95 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 AL358472.4-201ENST00000633140 710 ntBASIC17.91■□□□□ 0.46
CCDC42Q96M95 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 PI4KAP1-204ENST00000612579 1703 ntBASIC17.91■□□□□ 0.46
CCDC42Q96M95 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC42Q96M95 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC42Q96M95 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 REXO1L8P-201ENST00000604378 1897 ntBASIC17.9■□□□□ 0.46
CCDC42Q96M95 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.9■□□□□ 0.46
CCDC42Q96M95 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 MTDHP3-201ENST00000594186 672 ntBASIC17.9■□□□□ 0.46
CCDC42Q96M95 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.9■□□□□ 0.46
CCDC42Q96M95 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC42Q96M95 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC42Q96M95 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.89■□□□□ 0.46
CCDC42Q96M95 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC42Q96M95 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.89■□□□□ 0.46
CCDC42Q96M95 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
CCDC42Q96M95 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms