Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AKR7A2P1-201ENST00000460134 915 ntBASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 PTP4A1P2-201ENST00000546033 454 ntBASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 AP000997.3-201ENST00000623333 2250 ntBASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 AL355864.2-201ENST00000447420 863 ntBASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 FAM86HP-204ENST00000513466 959 ntBASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 HNRNPUP1-201ENST00000554987 333 ntBASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 PKD1P1-201ENST00000458669 6805 ntBASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMC1BQ8NDV3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 MIR326-201ENST00000362220 95 ntBASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 AC104306.2-201ENST00000451877 341 ntBASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 EIF4HP1-201ENST00000453115 687 ntBASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 RN7SL399P-201ENST00000471648 279 ntBASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 TMEM198B-204ENST00000484016 896 ntBASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 AC068587.3-201ENST00000526613 355 ntBASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 MIR5572-201ENST00000583188 137 ntBASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 LINC01451-201ENST00000623792 534 ntBASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.45■□□□□ 0.7
SMC1BQ8NDV3 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms