Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 TUBB8P12-201ENST00000308911 1335 ntBASIC15.4■□□□□ 0.06
BEST3Q8N1M1 TUBB7P-202ENST00000428444 1305 ntBASIC15.4■□□□□ 0.06
BEST3Q8N1M1 TUBB8P7-204ENST00000567960 1332 ntBASIC15.4■□□□□ 0.06
BEST3Q8N1M1 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.4■□□□□ 0.06
BEST3Q8N1M1 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.39■□□□□ 0.05
BEST3Q8N1M1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 AC011270.2-201ENST00000624293 2550 ntBASIC15.39■□□□□ 0.05
BEST3Q8N1M1 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 AP001094.4-201ENST00000579008 2176 ntBASIC15.39■□□□□ 0.05
BEST3Q8N1M1 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 AC016027.1-202ENST00000607927 1699 ntBASIC15.39■□□□□ 0.05
BEST3Q8N1M1 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 AC093512.1-201ENST00000617969 520 ntBASIC15.39■□□□□ 0.05
BEST3Q8N1M1 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BEST3Q8N1M1 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 FAM86GP-201ENST00000448322 971 ntBASIC15.38■□□□□ 0.05
BEST3Q8N1M1 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 LINC01225-203ENST00000563550 1244 ntBASIC15.38■□□□□ 0.05
BEST3Q8N1M1 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 Z92544.3-201ENST00000624747 417 ntBASIC15.38■□□□□ 0.05
BEST3Q8N1M1 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.38■□□□□ 0.05
BEST3Q8N1M1 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms