Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PDLIM3Q53GG5 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
PDLIM3Q53GG5 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.83□□□□□ -0.19
PDLIM3Q53GG5 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
PDLIM3Q53GG5 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
PDLIM3Q53GG5 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
PDLIM3Q53GG5 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
PDLIM3Q53GG5 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
PDLIM3Q53GG5 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CICP6-201ENST00000457191 2729 ntBASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CYP2T1P-202ENST00000641596 2535 ntBASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 AL353593.2-201ENST00000602529 1483 ntBASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 AP002490.2-201ENST00000524791 560 ntBASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 AL138831.2-201ENST00000606564 490 ntBASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 ING5-213ENST00000636051 4199 ntTSL 5 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PDLIM3Q53GG5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 FRMD8P1-201ENST00000440433 1524 ntBASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 RN7SL606P-201ENST00000472779 293 ntBASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 AP005901.3-202ENST00000581653 237 ntBASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms