Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 SERBP1P5-201ENST00000510079 1181 ntBASIC17.55■□□□□ 0.4
USP41Q3LFD5 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 PKD1P1-201ENST00000458669 6805 ntBASIC17.55■□□□□ 0.4
USP41Q3LFD5 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 AD000864.1-201ENST00000624076 2295 ntBASIC17.55■□□□□ 0.4
USP41Q3LFD5 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 CETN4P-206ENST00000642099 2168 ntBASIC17.55■□□□□ 0.4
USP41Q3LFD5 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 MTND6P24-201ENST00000440466 518 ntBASIC17.54■□□□□ 0.4
USP41Q3LFD5 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 RN7SL828P-201ENST00000607615 303 ntBASIC17.54■□□□□ 0.4
USP41Q3LFD5 AL589739.1-201ENST00000607720 493 ntBASIC17.54■□□□□ 0.4
USP41Q3LFD5 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP41Q3LFD5 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.54■□□□□ 0.4
USP41Q3LFD5 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 AC063926.2-201ENST00000623766 1308 ntBASIC17.53■□□□□ 0.4
USP41Q3LFD5 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 AC005034.1-201ENST00000426657 489 ntBASIC17.53■□□□□ 0.4
USP41Q3LFD5 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 AC005225.4-201ENST00000557330 545 ntBASIC17.53■□□□□ 0.4
USP41Q3LFD5 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 AC012645.4-201ENST00000610691 1061 ntBASIC17.53■□□□□ 0.4
USP41Q3LFD5 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP41Q3LFD5 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
USP41Q3LFD5 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms