Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 RPS2P28-201ENST00000314255 741 ntBASIC17.51■□□□□ 0.39
LIG3P49916 AC003669.1-201ENST00000334569 611 ntBASIC17.51■□□□□ 0.39
LIG3P49916 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.51■□□□□ 0.39
LIG3P49916 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.51■□□□□ 0.39
LIG3P49916 OR7E14P-202ENST00000530490 1290 ntBASIC17.51■□□□□ 0.39
LIG3P49916 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.51■□□□□ 0.39
LIG3P49916 AL049840.3-201ENST00000602669 611 ntBASIC17.51■□□□□ 0.39
LIG3P49916 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 FAM215A-202ENST00000632077 792 ntBASIC17.51■□□□□ 0.39
LIG3P49916 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.51■□□□□ 0.39
LIG3P49916 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 AC116353.5-201ENST00000638148 1699 ntBASIC17.51■□□□□ 0.39
LIG3P49916 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LIG3P49916 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LIG3P49916 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.5■□□□□ 0.39
LIG3P49916 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.5■□□□□ 0.39
LIG3P49916 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 AC078925.2-201ENST00000624013 1973 ntBASIC17.5■□□□□ 0.39
LIG3P49916 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 AC005104.2-201ENST00000427818 678 ntBASIC17.5■□□□□ 0.39
LIG3P49916 PRYP5-201ENST00000451909 266 ntBASIC17.5■□□□□ 0.39
LIG3P49916 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 AC093909.1-201ENST00000504731 1122 ntBASIC17.5■□□□□ 0.39
LIG3P49916 STK19B-204ENST00000512515 211 ntBASIC17.5■□□□□ 0.39
LIG3P49916 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.5■□□□□ 0.39
LIG3P49916 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
LIG3P49916 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
LIG3P49916 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LIG3P49916 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
LIG3P49916 AC148477.5-201ENST00000625164 1645 ntBASIC17.5■□□□□ 0.39
LIG3P49916 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.5■□□□□ 0.39
LIG3P49916 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIG3P49916 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.5■□□□□ 0.39
LIG3P49916 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.49■□□□□ 0.39
LIG3P49916 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.49■□□□□ 0.39
LIG3P49916 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.49■□□□□ 0.39
LIG3P49916 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.49■□□□□ 0.39
LIG3P49916 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms