Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX2P35548 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX2P35548 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.87■□□□□ 0.13
MSX2P35548 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX2P35548 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 BX664615.1-201ENST00000443558 458 ntBASIC15.87■□□□□ 0.13
MSX2P35548 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.87■□□□□ 0.13
MSX2P35548 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.87■□□□□ 0.13
MSX2P35548 AC013467.2-201ENST00000605472 835 ntBASIC15.87■□□□□ 0.13
MSX2P35548 IGHV3-41-201ENST00000613121 348 ntBASIC15.87■□□□□ 0.13
MSX2P35548 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX2P35548 AL139011.1-202ENST00000642063 584 ntBASIC15.87■□□□□ 0.13
MSX2P35548 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
MSX2P35548 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.87■□□□□ 0.13
MSX2P35548 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.87■□□□□ 0.13
MSX2P35548 AC097637.2-201ENST00000624096 1997 ntBASIC15.87■□□□□ 0.13
MSX2P35548 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX2P35548 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
MSX2P35548 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
MSX2P35548 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 AC004817.3-201ENST00000602957 2129 ntBASIC15.86■□□□□ 0.13
MSX2P35548 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
MSX2P35548 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
MSX2P35548 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
MSX2P35548 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.86■□□□□ 0.13
MSX2P35548 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
MSX2P35548 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.86■□□□□ 0.13
MSX2P35548 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
MSX2P35548 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 ACTG1P4-201ENST00000425123 1122 ntBASIC15.86■□□□□ 0.13
MSX2P35548 TSPY5P-201ENST00000426936 936 ntBASIC15.86■□□□□ 0.13
MSX2P35548 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC15.86■□□□□ 0.13
MSX2P35548 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC15.86■□□□□ 0.13
MSX2P35548 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC15.86■□□□□ 0.13
MSX2P35548 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 SNX18-202ENST00000343017 3140 ntBASIC15.86■□□□□ 0.13
MSX2P35548 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
MSX2P35548 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.86■□□□□ 0.13
MSX2P35548 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
MSX2P35548 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.86■□□□□ 0.13
MSX2P35548 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
MSX2P35548 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSX2P35548 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
MSX2P35548 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.85■□□□□ 0.13
MSX2P35548 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.85■□□□□ 0.13
MSX2P35548 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.85■□□□□ 0.13
MSX2P35548 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.85■□□□□ 0.13
MSX2P35548 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
MSX2P35548 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms