Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SCN4AP35499 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN4AP35499 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN4AP35499 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN4AP35499 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN4AP35499 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC19.18■□□□□ 0.66
SCN4AP35499 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SCN4AP35499 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SCN4AP35499 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC19.18■□□□□ 0.66
SCN4AP35499 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.18■□□□□ 0.66
SCN4AP35499 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 AL607033.1-201ENST00000623900 1599 ntBASIC19.18■□□□□ 0.66
SCN4AP35499 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 AC004898.1-201ENST00000451057 766 ntBASIC19.18■□□□□ 0.66
SCN4AP35499 AC093433.1-201ENST00000458048 571 ntBASIC19.18■□□□□ 0.66
SCN4AP35499 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.18■□□□□ 0.66
SCN4AP35499 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN4AP35499 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SCN4AP35499 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN4AP35499 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.17■□□□□ 0.66
SCN4AP35499 GGT4P-201ENST00000623672 1708 ntBASIC19.17■□□□□ 0.66
SCN4AP35499 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.17■□□□□ 0.66
SCN4AP35499 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SCN4AP35499 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SCN4AP35499 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SCN4AP35499 AL662890.1-201ENST00000396818 632 ntBASIC19.17■□□□□ 0.66
SCN4AP35499 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.17■□□□□ 0.66
SCN4AP35499 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.17■□□□□ 0.66
SCN4AP35499 Z93015.1-201ENST00000451718 390 ntBASIC19.17■□□□□ 0.66
SCN4AP35499 LDHBP1-201ENST00000455730 1119 ntBASIC19.17■□□□□ 0.66
SCN4AP35499 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.17■□□□□ 0.66
SCN4AP35499 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.17■□□□□ 0.66
SCN4AP35499 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.17■□□□□ 0.66
SCN4AP35499 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.17■□□□□ 0.66
SCN4AP35499 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.17■□□□□ 0.66
SCN4AP35499 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.17■□□□□ 0.66
SCN4AP35499 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.17■□□□□ 0.66
SCN4AP35499 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.17■□□□□ 0.66
SCN4AP35499 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN4AP35499 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.16■□□□□ 0.66
SCN4AP35499 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 C1QBPP1-201ENST00000400117 770 ntBASIC19.16■□□□□ 0.66
SCN4AP35499 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.16■□□□□ 0.66
SCN4AP35499 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 TARDBPP1-201ENST00000442013 1203 ntBASIC19.16■□□□□ 0.66
SCN4AP35499 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.16■□□□□ 0.66
SCN4AP35499 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.16■□□□□ 0.66
SCN4AP35499 MIR4706-201ENST00000582134 82 ntBASIC19.16■□□□□ 0.66
SCN4AP35499 SPCS2P2-201ENST00000603270 608 ntBASIC19.16■□□□□ 0.66
SCN4AP35499 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.16■□□□□ 0.66
SCN4AP35499 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SCN4AP35499 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.16■□□□□ 0.66
SCN4AP35499 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.16■□□□□ 0.66
SCN4AP35499 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.16■□□□□ 0.66
SCN4AP35499 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.16■□□□□ 0.66
SCN4AP35499 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms