Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PRAL-201ENST00000624952 3286 ntBASIC13.4□□□□□ -0.26
HMGB3O15347 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HMGB3O15347 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.4□□□□□ -0.27
HMGB3O15347 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
HMGB3O15347 PDE7B-201ENST00000308191 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
HMGB3O15347 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.27
HMGB3O15347 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.39□□□□□ -0.27
HMGB3O15347 FRMD8P1-201ENST00000440433 1524 ntBASIC13.39□□□□□ -0.27
HMGB3O15347 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 MIR935-201ENST00000401179 91 ntBASIC13.39□□□□□ -0.27
HMGB3O15347 MIR1238-201ENST00000408483 83 ntBASIC13.39□□□□□ -0.27
HMGB3O15347 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC13.39□□□□□ -0.27
HMGB3O15347 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC13.39□□□□□ -0.27
HMGB3O15347 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.39□□□□□ -0.27
HMGB3O15347 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC13.39□□□□□ -0.27
HMGB3O15347 TEN1-204ENST00000588202 862 ntTSL 3 BASIC13.39□□□□□ -0.27
HMGB3O15347 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 KRT89P-201ENST00000620027 1478 ntBASIC13.39□□□□□ -0.27
HMGB3O15347 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.39□□□□□ -0.27
HMGB3O15347 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
HMGB3O15347 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
HMGB3O15347 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.39□□□□□ -0.27
HMGB3O15347 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 AC126177.1-201ENST00000547829 2218 ntBASIC13.39□□□□□ -0.27
HMGB3O15347 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC13.39□□□□□ -0.27
HMGB3O15347 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
HMGB3O15347 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.39□□□□□ -0.27
HMGB3O15347 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HMGB3O15347 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.38□□□□□ -0.27
HMGB3O15347 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.38□□□□□ -0.27
HMGB3O15347 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 QSOX1-202ENST00000367602 9311 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC13.38□□□□□ -0.27
HMGB3O15347 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
HMGB3O15347 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 MYCLP1-201ENST00000372451 1075 ntBASIC13.38□□□□□ -0.27
HMGB3O15347 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HMGB3O15347 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 MTCL1P1-201ENST00000446207 792 ntBASIC13.38□□□□□ -0.27
HMGB3O15347 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC13.38□□□□□ -0.27
HMGB3O15347 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC13.38□□□□□ -0.27
HMGB3O15347 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC13.38□□□□□ -0.27
HMGB3O15347 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC13.38□□□□□ -0.27
HMGB3O15347 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.38□□□□□ -0.27
HMGB3O15347 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HMGB3O15347 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.38□□□□□ -0.27
HMGB3O15347 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms