Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXN3O00409 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
FOXN3O00409 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXN3O00409 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
FOXN3O00409 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXN3O00409 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.73■□□□□ 0.43
FOXN3O00409 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
FOXN3O00409 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.73■□□□□ 0.43
FOXN3O00409 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.73■□□□□ 0.43
FOXN3O00409 AC018845.2-201ENST00000568326 409 ntBASIC17.73■□□□□ 0.43
FOXN3O00409 MIR3909-201ENST00000579518 119 ntBASIC17.73■□□□□ 0.43
FOXN3O00409 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.73■□□□□ 0.43
FOXN3O00409 AC023141.13-201ENST00000604991 943 ntBASIC17.73■□□□□ 0.43
FOXN3O00409 AC021097.1-201ENST00000607902 574 ntBASIC17.73■□□□□ 0.43
FOXN3O00409 AC004877.2-201ENST00000623941 599 ntBASIC17.73■□□□□ 0.43
FOXN3O00409 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXN3O00409 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXN3O00409 AC025580.3-201ENST00000617932 1424 ntBASIC17.72■□□□□ 0.43
FOXN3O00409 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXN3O00409 AC005622.1-201ENST00000636801 1703 ntBASIC17.72■□□□□ 0.43
FOXN3O00409 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
FOXN3O00409 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
FOXN3O00409 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXN3O00409 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
FOXN3O00409 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.72■□□□□ 0.43
FOXN3O00409 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.72■□□□□ 0.43
FOXN3O00409 AL590627.1-203ENST00000421194 1026 ntBASIC17.72■□□□□ 0.43
FOXN3O00409 AC007967.2-201ENST00000432613 625 ntBASIC17.72■□□□□ 0.43
FOXN3O00409 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.72■□□□□ 0.43
FOXN3O00409 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXN3O00409 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.72■□□□□ 0.43
FOXN3O00409 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXN3O00409 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.72■□□□□ 0.43
FOXN3O00409 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
FOXN3O00409 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
FOXN3O00409 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXN3O00409 AC064836.3-201ENST00000607928 673 ntBASIC17.72■□□□□ 0.43
FOXN3O00409 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.72■□□□□ 0.43
FOXN3O00409 AC007064.4-201ENST00000637740 555 ntBASIC17.72■□□□□ 0.43
FOXN3O00409 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXN3O00409 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXN3O00409 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
FOXN3O00409 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
FOXN3O00409 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXN3O00409 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXN3O00409 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
FOXN3O00409 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXN3O00409 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
FOXN3O00409 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXN3O00409 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.71■□□□□ 0.43
FOXN3O00409 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms