Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 AC138028.6-201ENST00000616106 1482 ntBASIC16.13■□□□□ 0.17
VPS13AQ96RL7 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 AC091046.1-201ENST00000331871 207 ntBASIC16.13■□□□□ 0.17
VPS13AQ96RL7 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 EIF4HP1-201ENST00000453115 687 ntBASIC16.13■□□□□ 0.17
VPS13AQ96RL7 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 AL008638.5-201ENST00000623814 1298 ntBASIC16.13■□□□□ 0.17
VPS13AQ96RL7 AL136982.4-201ENST00000437689 1740 ntBASIC16.13■□□□□ 0.17
VPS13AQ96RL7 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AC018470.1-201ENST00000624790 3129 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 RN7SL399P-201ENST00000471648 279 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 FTH1P14-201ENST00000482930 551 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AC093525.9-201ENST00000624961 1746 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AC091804.1-201ENST00000486888 567 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 PCDHB17P-201ENST00000539533 2393 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AC139713.2-201ENST00000641328 2723 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AL627389.1-201ENST00000413508 1182 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 YBX1P6-201ENST00000442962 1002 ntBASIC16.12■□□□□ 0.17
VPS13AQ96RL7 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS13AQ96RL7 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 AL662890.1-201ENST00000396818 632 ntBASIC16.11■□□□□ 0.17
VPS13AQ96RL7 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.11■□□□□ 0.17
VPS13AQ96RL7 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 AL133373.2-201ENST00000623187 2828 ntBASIC16.11■□□□□ 0.17
VPS13AQ96RL7 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VPS13AQ96RL7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms