Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TSSK5P-201ENST00000423978 907 ntBASIC17.58■□□□□ 0.4
USP41Q3LFD5 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.58■□□□□ 0.4
USP41Q3LFD5 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 AL139011.1-202ENST00000642063 584 ntBASIC17.58■□□□□ 0.4
USP41Q3LFD5 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 MRPS18AP1-201ENST00000414458 589 ntBASIC17.57■□□□□ 0.4
USP41Q3LFD5 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 AC022144.1-201ENST00000602255 1580 ntBASIC17.57■□□□□ 0.4
USP41Q3LFD5 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP41Q3LFD5 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
USP41Q3LFD5 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 AL391256.1-201ENST00000443260 1855 ntBASIC17.56■□□□□ 0.4
USP41Q3LFD5 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.56■□□□□ 0.4
USP41Q3LFD5 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 RNA5SP410-201ENST00000516285 106 ntBASIC17.56■□□□□ 0.4
USP41Q3LFD5 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 AC009118.2-201ENST00000613275 655 ntBASIC17.56■□□□□ 0.4
USP41Q3LFD5 AL023806.1-201ENST00000603994 1649 ntBASIC17.56■□□□□ 0.4
USP41Q3LFD5 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.56■□□□□ 0.4
USP41Q3LFD5 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP41Q3LFD5 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USP41Q3LFD5 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.55■□□□□ 0.4
USP41Q3LFD5 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP41Q3LFD5 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms