Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
PCDH1Q08174 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDH1Q08174 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDH1Q08174 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH1Q08174 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.02■□□□□ 0.15
PCDH1Q08174 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
PCDH1Q08174 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
PCDH1Q08174 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDH1Q08174 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.02■□□□□ 0.15
PCDH1Q08174 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH1Q08174 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH1Q08174 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH1Q08174 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH1Q08174 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDH1Q08174 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
PCDH1Q08174 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH1Q08174 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
PCDH1Q08174 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
PCDH1Q08174 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDH1Q08174 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
PCDH1Q08174 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PCDH1Q08174 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 AL513480.1-201ENST00000451731 511 ntBASIC16.01■□□□□ 0.15
PCDH1Q08174 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.01■□□□□ 0.15
PCDH1Q08174 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.01■□□□□ 0.15
PCDH1Q08174 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.01■□□□□ 0.15
PCDH1Q08174 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.01■□□□□ 0.15
PCDH1Q08174 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PCDH1Q08174 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDH1Q08174 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDH1Q08174 AL513477.1-201ENST00000602865 2407 ntBASIC16■□□□□ 0.15
PCDH1Q08174 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16■□□□□ 0.15
PCDH1Q08174 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16■□□□□ 0.15
PCDH1Q08174 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PCDH1Q08174 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
PCDH1Q08174 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16■□□□□ 0.15
PCDH1Q08174 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16■□□□□ 0.15
PCDH1Q08174 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 LBH-204ENST00000406087 559 ntTSL 4 BASIC16■□□□□ 0.15
PCDH1Q08174 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PCDH1Q08174 AC010507.1-201ENST00000633895 436 ntBASIC16■□□□□ 0.15
PCDH1Q08174 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PCDH1Q08174 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
PCDH1Q08174 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PCDH1Q08174 AC026691.1-201ENST00000602502 2017 ntBASIC16■□□□□ 0.15
PCDH1Q08174 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16■□□□□ 0.15
PCDH1Q08174 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PCDH1Q08174 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PCDH1Q08174 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PCDH1Q08174 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH1Q08174 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
PCDH1Q08174 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PCDH1Q08174 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH1Q08174 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms