Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
H3F3AP84243 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC14.83□□□□□ -0.03
H3F3AP84243 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.83□□□□□ -0.03
H3F3AP84243 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
H3F3AP84243 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
H3F3AP84243 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
H3F3AP84243 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.83□□□□□ -0.04
H3F3AP84243 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.83□□□□□ -0.04
H3F3AP84243 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
H3F3AP84243 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
H3F3AP84243 AC092902.6-201ENST00000641783 218 ntBASIC14.83□□□□□ -0.04
H3F3AP84243 AC046158.3-201ENST00000624947 2558 ntBASIC14.83□□□□□ -0.04
H3F3AP84243 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
H3F3AP84243 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
H3F3AP84243 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.83□□□□□ -0.04
H3F3AP84243 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
H3F3AP84243 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.83□□□□□ -0.04
H3F3AP84243 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.83□□□□□ -0.04
H3F3AP84243 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.83□□□□□ -0.04
H3F3AP84243 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
H3F3AP84243 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
H3F3AP84243 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
H3F3AP84243 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
H3F3AP84243 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
H3F3AP84243 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.82□□□□□ -0.04
H3F3AP84243 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.82□□□□□ -0.04
H3F3AP84243 ACTG1P14-201ENST00000446382 1122 ntBASIC14.82□□□□□ -0.04
H3F3AP84243 DNAJB3-201ENST00000446806 729 ntBASIC14.82□□□□□ -0.04
H3F3AP84243 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.82□□□□□ -0.04
H3F3AP84243 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.82□□□□□ -0.04
H3F3AP84243 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
H3F3AP84243 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.82□□□□□ -0.04
H3F3AP84243 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.82□□□□□ -0.04
H3F3AP84243 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.82□□□□□ -0.04
H3F3AP84243 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 WASH6P-202ENST00000359512 1437 ntBASIC14.82□□□□□ -0.04
H3F3AP84243 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.82□□□□□ -0.04
H3F3AP84243 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
H3F3AP84243 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
H3F3AP84243 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms