Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPL39P62891 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPL39P62891 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
RPL39P62891 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC11.79□□□□□ -0.52
RPL39P62891 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPL39P62891 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
RPL39P62891 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC11.79□□□□□ -0.52
RPL39P62891 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC11.79□□□□□ -0.52
RPL39P62891 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPL39P62891 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPL39P62891 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
RPL39P62891 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
RPL39P62891 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
RPL39P62891 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 AC006277.1-201ENST00000624348 1610 ntBASIC11.78□□□□□ -0.52
RPL39P62891 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC11.78□□□□□ -0.52
RPL39P62891 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC11.78□□□□□ -0.52
RPL39P62891 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 AL845331.1-201ENST00000424978 1190 ntBASIC11.78□□□□□ -0.52
RPL39P62891 RN7SL606P-201ENST00000472779 293 ntBASIC11.78□□□□□ -0.52
RPL39P62891 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC11.78□□□□□ -0.52
RPL39P62891 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 AC011840.4-201ENST00000578471 627 ntBASIC11.78□□□□□ -0.52
RPL39P62891 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC11.78□□□□□ -0.52
RPL39P62891 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 AC145285.6-201ENST00000604632 637 ntBASIC11.78□□□□□ -0.52
RPL39P62891 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
RPL39P62891 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
RPL39P62891 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
RPL39P62891 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 KRT8P49-201ENST00000604166 1432 ntBASIC11.77□□□□□ -0.52
RPL39P62891 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC11.77□□□□□ -0.52
RPL39P62891 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC11.77□□□□□ -0.52
RPL39P62891 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC11.77□□□□□ -0.52
RPL39P62891 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC11.77□□□□□ -0.52
RPL39P62891 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
RPL39P62891 AP003680.1-201ENST00000598970 3660 ntBASIC11.77□□□□□ -0.53
RPL39P62891 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
RPL39P62891 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms