Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC093726.1-201ENST00000608064 963 ntBASIC17.47■□□□□ 0.39
COL4A4P53420 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.47■□□□□ 0.39
COL4A4P53420 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.47■□□□□ 0.39
COL4A4P53420 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL4A4P53420 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.46■□□□□ 0.39
COL4A4P53420 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.46■□□□□ 0.39
COL4A4P53420 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
COL4A4P53420 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
COL4A4P53420 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.46■□□□□ 0.39
COL4A4P53420 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.46■□□□□ 0.39
COL4A4P53420 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.46■□□□□ 0.39
COL4A4P53420 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.46■□□□□ 0.39
COL4A4P53420 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.46■□□□□ 0.39
COL4A4P53420 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.46■□□□□ 0.39
COL4A4P53420 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.46■□□□□ 0.39
COL4A4P53420 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.46■□□□□ 0.39
COL4A4P53420 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.46■□□□□ 0.39
COL4A4P53420 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.46■□□□□ 0.39
COL4A4P53420 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.46■□□□□ 0.39
COL4A4P53420 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
COL4A4P53420 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.46■□□□□ 0.39
COL4A4P53420 AC015936.2-201ENST00000593177 259 ntBASIC17.46■□□□□ 0.39
COL4A4P53420 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
COL4A4P53420 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.46■□□□□ 0.39
COL4A4P53420 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.46■□□□□ 0.39
COL4A4P53420 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A4P53420 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.46■□□□□ 0.38
COL4A4P53420 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.46■□□□□ 0.38
COL4A4P53420 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.38
COL4A4P53420 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 AC092933.1-201ENST00000393644 945 ntBASIC17.45■□□□□ 0.38
COL4A4P53420 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
COL4A4P53420 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A4P53420 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL4A4P53420 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A4P53420 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.45■□□□□ 0.38
COL4A4P53420 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A4P53420 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A4P53420 GPR182-203ENST00000622922 591 ntBASIC17.45■□□□□ 0.38
COL4A4P53420 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A4P53420 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A4P53420 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A4P53420 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL4A4P53420 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
COL4A4P53420 RNF216P1-203ENST00000404404 2427 ntBASIC17.45■□□□□ 0.38
COL4A4P53420 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A4P53420 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL4A4P53420 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
COL4A4P53420 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
COL4A4P53420 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL4A4P53420 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A4P53420 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
COL4A4P53420 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A4P53420 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A4P53420 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A4P53420 AC092337.1-201ENST00000568699 1129 ntBASIC17.45■□□□□ 0.38
COL4A4P53420 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.45■□□□□ 0.38
COL4A4P53420 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A4P53420 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A4P53420 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 AL671710.1-201ENST00000610245 2349 ntBASIC17.44■□□□□ 0.38
COL4A4P53420 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms