Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC27.26■■□□□ 1.96
CUX1P39880 AC099548.2-209ENST00000480264 625 ntBASIC27.26■■□□□ 1.96
CUX1P39880 HNRNPA1P13-201ENST00000510646 963 ntBASIC27.26■■□□□ 1.96
CUX1P39880 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC27.26■■□□□ 1.96
CUX1P39880 PAM16-215ENST00000577031 548 ntTSL 4 BASIC27.26■■□□□ 1.96
CUX1P39880 AC084346.2-201ENST00000607097 949 ntBASIC27.26■■□□□ 1.96
CUX1P39880 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC27.26■■□□□ 1.96
CUX1P39880 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CUX1P39880 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CUX1P39880 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
CUX1P39880 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CUX1P39880 NEFHP1-201ENST00000412845 2629 ntBASIC27.26■■□□□ 1.95
CUX1P39880 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC27.26■■□□□ 1.95
CUX1P39880 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
CUX1P39880 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
CUX1P39880 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CUX1P39880 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
CUX1P39880 MPV17-206ENST00000402722 827 ntTSL 3 BASIC27.26■■□□□ 1.95
CUX1P39880 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC27.26■■□□□ 1.95
CUX1P39880 ZNF767P-206ENST00000513792 565 ntBASIC27.26■■□□□ 1.95
CUX1P39880 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
CUX1P39880 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
CUX1P39880 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC27.26■■□□□ 1.95
CUX1P39880 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
CUX1P39880 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CUX1P39880 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
CUX1P39880 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC27.25■■□□□ 1.95
CUX1P39880 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CUX1P39880 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
CUX1P39880 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CUX1P39880 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CUX1P39880 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
CUX1P39880 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
CUX1P39880 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC27.25■■□□□ 1.95
CUX1P39880 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC27.25■■□□□ 1.95
CUX1P39880 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 AL365330.1-201ENST00000607459 531 ntBASIC27.25■■□□□ 1.95
CUX1P39880 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC27.25■■□□□ 1.95
CUX1P39880 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC27.25■■□□□ 1.95
CUX1P39880 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
CUX1P39880 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CUX1P39880 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC27.24■■□□□ 1.95
CUX1P39880 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC27.24■■□□□ 1.95
CUX1P39880 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CUX1P39880 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CUX1P39880 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC27.24■■□□□ 1.95
CUX1P39880 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
CUX1P39880 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CUX1P39880 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC27.24■■□□□ 1.95
CUX1P39880 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CUX1P39880 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
CUX1P39880 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
CUX1P39880 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
CUX1P39880 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC27.23■■□□□ 1.95
CUX1P39880 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CUX1P39880 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CUX1P39880 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CUX1P39880 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
CUX1P39880 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CUX1P39880 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
CUX1P39880 AC108725.1-201ENST00000495472 409 ntBASIC27.23■■□□□ 1.95
CUX1P39880 SLC25A47P1-201ENST00000531577 414 ntBASIC27.23■■□□□ 1.95
CUX1P39880 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC27.23■■□□□ 1.95
CUX1P39880 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CUX1P39880 CU634019.7-201ENST00000624153 1185 ntBASIC27.23■■□□□ 1.95
CUX1P39880 FP236241.2-201ENST00000624906 1185 ntBASIC27.23■■□□□ 1.95
CUX1P39880 PFAS-212ENST00000625942 396 ntTSL 5 BASIC27.23■■□□□ 1.95
CUX1P39880 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
CUX1P39880 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC27.23■■□□□ 1.95
CUX1P39880 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CUX1P39880 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC27.23■■□□□ 1.95
CUX1P39880 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CUX1P39880 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC27.23■■□□□ 1.95
CUX1P39880 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
CUX1P39880 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX1P39880 LBX2-201ENST00000341396 886 ntTSL 3 BASIC27.22■■□□□ 1.95
CUX1P39880 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC27.22■■□□□ 1.95
CUX1P39880 CSF2RBP1-201ENST00000447905 391 ntBASIC27.22■■□□□ 1.95
CUX1P39880 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC27.22■■□□□ 1.95
CUX1P39880 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC27.22■■□□□ 1.95
CUX1P39880 AC104596.2-201ENST00000512793 793 ntBASIC27.22■■□□□ 1.95
CUX1P39880 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC27.22■■□□□ 1.95
CUX1P39880 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CUX1P39880 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC27.22■■□□□ 1.95
CUX1P39880 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC27.22■■□□□ 1.95
CUX1P39880 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC27.22■■□□□ 1.95
CUX1P39880 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CUX1P39880 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX1P39880 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC27.22■■□□□ 1.95
CUX1P39880 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX1P39880 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC27.22■■□□□ 1.95
CUX1P39880 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
CUX1P39880 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms