Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC21.47■■□□□ 1.03
COL18A1P39060 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC21.47■■□□□ 1.03
COL18A1P39060 MIR6787-201ENST00000616675 61 ntBASIC21.47■■□□□ 1.03
COL18A1P39060 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC21.47■■□□□ 1.03
COL18A1P39060 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC21.47■■□□□ 1.03
COL18A1P39060 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL18A1P39060 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL18A1P39060 AC006538.1-201ENST00000567905 1585 ntBASIC21.47■■□□□ 1.03
COL18A1P39060 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL18A1P39060 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC21.47■■□□□ 1.03
COL18A1P39060 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.47■■□□□ 1.03
COL18A1P39060 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.47■■□□□ 1.03
COL18A1P39060 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL18A1P39060 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL18A1P39060 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL18A1P39060 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.46■■□□□ 1.03
COL18A1P39060 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL18A1P39060 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL18A1P39060 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL18A1P39060 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
COL18A1P39060 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL18A1P39060 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
COL18A1P39060 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL18A1P39060 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
COL18A1P39060 AC068587.3-201ENST00000526613 355 ntBASIC21.46■■□□□ 1.03
COL18A1P39060 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
COL18A1P39060 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
COL18A1P39060 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.46■■□□□ 1.03
COL18A1P39060 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
COL18A1P39060 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.46■■□□□ 1.03
COL18A1P39060 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.46■■□□□ 1.03
COL18A1P39060 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
COL18A1P39060 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL18A1P39060 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC21.46■■□□□ 1.03
COL18A1P39060 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL18A1P39060 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
COL18A1P39060 TP73-213ENST00000604479 1623 ntTSL 5 BASIC21.46■■□□□ 1.03
COL18A1P39060 LBX2-201ENST00000341396 886 ntTSL 3 BASIC21.46■■□□□ 1.03
COL18A1P39060 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC21.46■■□□□ 1.03
COL18A1P39060 AC005229.1-201ENST00000392885 409 ntBASIC21.46■■□□□ 1.03
COL18A1P39060 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC21.46■■□□□ 1.03
COL18A1P39060 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC21.46■■□□□ 1.03
COL18A1P39060 AC108725.1-201ENST00000495472 409 ntBASIC21.46■■□□□ 1.03
COL18A1P39060 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC21.46■■□□□ 1.03
COL18A1P39060 FAM8A2P-201ENST00000528813 1142 ntBASIC21.46■■□□□ 1.03
COL18A1P39060 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC21.46■■□□□ 1.03
COL18A1P39060 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
COL18A1P39060 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC21.45■■□□□ 1.02
COL18A1P39060 AL133338.1-201ENST00000565695 1517 ntBASIC21.45■■□□□ 1.02
COL18A1P39060 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC21.45■■□□□ 1.02
COL18A1P39060 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL18A1P39060 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.45■■□□□ 1.02
COL18A1P39060 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL18A1P39060 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
COL18A1P39060 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL18A1P39060 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL18A1P39060 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL18A1P39060 AC099548.2-209ENST00000480264 625 ntBASIC21.45■■□□□ 1.02
COL18A1P39060 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC21.45■■□□□ 1.02
COL18A1P39060 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL18A1P39060 BTNL10-201ENST00000595971 695 ntBASIC21.45■■□□□ 1.02
COL18A1P39060 MIR6869-201ENST00000619434 62 ntBASIC21.45■■□□□ 1.02
COL18A1P39060 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL18A1P39060 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL18A1P39060 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.45■■□□□ 1.02
COL18A1P39060 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
COL18A1P39060 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.45■■□□□ 1.02
COL18A1P39060 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC21.44■■□□□ 1.02
COL18A1P39060 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
COL18A1P39060 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
COL18A1P39060 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC21.44■■□□□ 1.02
COL18A1P39060 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 TOMM22P5-201ENST00000416399 439 ntBASIC21.44■■□□□ 1.02
COL18A1P39060 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
COL18A1P39060 KRT18P64-201ENST00000434946 1219 ntBASIC21.44■■□□□ 1.02
COL18A1P39060 ACTBP11-201ENST00000436287 1126 ntBASIC21.44■■□□□ 1.02
COL18A1P39060 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC21.44■■□□□ 1.02
COL18A1P39060 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC21.44■■□□□ 1.02
COL18A1P39060 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 AC104596.2-201ENST00000512793 793 ntBASIC21.44■■□□□ 1.02
COL18A1P39060 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC21.44■■□□□ 1.02
COL18A1P39060 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 CU634019.7-201ENST00000624153 1185 ntBASIC21.44■■□□□ 1.02
COL18A1P39060 FP236241.2-201ENST00000624906 1185 ntBASIC21.44■■□□□ 1.02
COL18A1P39060 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 KRT8P44-201ENST00000441609 1350 ntBASIC21.44■■□□□ 1.02
COL18A1P39060 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC21.44■■□□□ 1.02
COL18A1P39060 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC21.44■■□□□ 1.02
COL18A1P39060 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 INTS4P2-202ENST00000614726 2019 ntBASIC21.44■■□□□ 1.02
COL18A1P39060 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
COL18A1P39060 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL18A1P39060 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms