Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.27■□□□□ 0.2
SHMT2P34897 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
SHMT2P34897 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHMT2P34897 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.27■□□□□ 0.19
SHMT2P34897 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SHMT2P34897 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.27■□□□□ 0.19
SHMT2P34897 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
SHMT2P34897 AC103702.1-201ENST00000548801 2630 ntBASIC16.27■□□□□ 0.19
SHMT2P34897 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.27■□□□□ 0.19
SHMT2P34897 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHMT2P34897 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHMT2P34897 AC006277.1-201ENST00000624348 1610 ntBASIC16.27■□□□□ 0.19
SHMT2P34897 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.26■□□□□ 0.19
SHMT2P34897 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
SHMT2P34897 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.26■□□□□ 0.19
SHMT2P34897 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.26■□□□□ 0.19
SHMT2P34897 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SHMT2P34897 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.26■□□□□ 0.19
SHMT2P34897 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 MKNK2P1-201ENST00000437526 628 ntBASIC16.26■□□□□ 0.19
SHMT2P34897 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.26■□□□□ 0.19
SHMT2P34897 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.26■□□□□ 0.19
SHMT2P34897 AC005829.1-201ENST00000570002 483 ntBASIC16.26■□□□□ 0.19
SHMT2P34897 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SHMT2P34897 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SHMT2P34897 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
SHMT2P34897 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHMT2P34897 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.26■□□□□ 0.19
SHMT2P34897 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHMT2P34897 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.25■□□□□ 0.19
SHMT2P34897 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SHMT2P34897 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
SHMT2P34897 AC002056.1-201ENST00000395613 760 ntBASIC16.25■□□□□ 0.19
SHMT2P34897 RPSAP43-201ENST00000402237 625 ntBASIC16.25■□□□□ 0.19
SHMT2P34897 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.25■□□□□ 0.19
SHMT2P34897 MIR1233-2-201ENST00000408138 82 ntBASIC16.25■□□□□ 0.19
SHMT2P34897 MIR1233-1-201ENST00000408722 82 ntBASIC16.25■□□□□ 0.19
SHMT2P34897 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.25■□□□□ 0.19
SHMT2P34897 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.25■□□□□ 0.19
SHMT2P34897 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.25■□□□□ 0.19
SHMT2P34897 FAM58CP-201ENST00000435741 640 ntBASIC16.25■□□□□ 0.19
SHMT2P34897 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.25■□□□□ 0.19
SHMT2P34897 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.25■□□□□ 0.19
SHMT2P34897 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.25■□□□□ 0.19
SHMT2P34897 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.25■□□□□ 0.19
SHMT2P34897 AP002472.1-201ENST00000577490 586 ntBASIC16.25■□□□□ 0.19
SHMT2P34897 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.25■□□□□ 0.19
SHMT2P34897 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
SHMT2P34897 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
SHMT2P34897 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.25■□□□□ 0.19
SHMT2P34897 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SHMT2P34897 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.25■□□□□ 0.19
SHMT2P34897 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms