Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL6A3P12111 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.94■□□□□ 0.3
COL6A3P12111 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.94■□□□□ 0.3
COL6A3P12111 CYP2A7P1-201ENST00000595391 815 ntBASIC16.94■□□□□ 0.3
COL6A3P12111 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A3P12111 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.93■□□□□ 0.3
COL6A3P12111 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.93■□□□□ 0.3
COL6A3P12111 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A3P12111 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A3P12111 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
COL6A3P12111 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A3P12111 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A3P12111 AC021097.1-201ENST00000607902 574 ntBASIC16.93■□□□□ 0.3
COL6A3P12111 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 LYSMD4-203ENST00000378904 2122 ntBASIC16.93■□□□□ 0.3
COL6A3P12111 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
COL6A3P12111 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A3P12111 AC006001.1-201ENST00000325130 474 ntBASIC16.93■□□□□ 0.3
COL6A3P12111 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.93■□□□□ 0.3
COL6A3P12111 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A3P12111 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A3P12111 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A3P12111 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.93■□□□□ 0.3
COL6A3P12111 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A3P12111 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
COL6A3P12111 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.92■□□□□ 0.3
COL6A3P12111 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 AC234782.1-201ENST00000451950 919 ntBASIC16.92■□□□□ 0.3
COL6A3P12111 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A3P12111 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 RPSAP31-201ENST00000416648 895 ntBASIC16.92■□□□□ 0.3
COL6A3P12111 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A3P12111 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 BRI3BPP1-201ENST00000594224 787 ntBASIC16.92■□□□□ 0.3
COL6A3P12111 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A3P12111 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 TOP3BP1-201ENST00000420768 1380 ntBASIC16.92■□□□□ 0.3
COL6A3P12111 Z97205.2-201ENST00000564697 1639 ntBASIC16.92■□□□□ 0.3
COL6A3P12111 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A3P12111 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A3P12111 AC106794.1-201ENST00000506935 792 ntBASIC16.91■□□□□ 0.3
COL6A3P12111 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A3P12111 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
COL6A3P12111 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A3P12111 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A3P12111 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
COL6A3P12111 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL6A3P12111 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms