Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.55■□□□□ 0.72
HMGB1P09429 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
HMGB1P09429 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.55■□□□□ 0.72
HMGB1P09429 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGB1P09429 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGB1P09429 SLC25A1P1-201ENST00000528351 927 ntBASIC19.55■□□□□ 0.72
HMGB1P09429 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGB1P09429 PDPK2P-202ENST00000562415 1191 ntBASIC19.55■□□□□ 0.72
HMGB1P09429 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.55■□□□□ 0.72
HMGB1P09429 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGB1P09429 AC006449.6-201ENST00000612330 2296 ntBASIC19.55■□□□□ 0.72
HMGB1P09429 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGB1P09429 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.54■□□□□ 0.72
HMGB1P09429 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HMGB1P09429 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
HMGB1P09429 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 AC074386.1-202ENST00000463561 864 ntBASIC19.54■□□□□ 0.72
HMGB1P09429 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.54■□□□□ 0.72
HMGB1P09429 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.54■□□□□ 0.72
HMGB1P09429 AL391005.1-201ENST00000623953 2435 ntBASIC19.54■□□□□ 0.72
HMGB1P09429 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HMGB1P09429 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB1P09429 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGB1P09429 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.54■□□□□ 0.72
HMGB1P09429 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
HMGB1P09429 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 AC079328.2-201ENST00000561241 3354 ntBASIC19.53■□□□□ 0.72
HMGB1P09429 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.53■□□□□ 0.72
HMGB1P09429 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 MED15P5-201ENST00000423150 992 ntBASIC19.53■□□□□ 0.72
HMGB1P09429 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 KRT18P3-201ENST00000451602 1288 ntBASIC19.53■□□□□ 0.72
HMGB1P09429 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.53■□□□□ 0.72
HMGB1P09429 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 AC140113.2-201ENST00000604370 208 ntBASIC19.53■□□□□ 0.72
HMGB1P09429 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.53■□□□□ 0.72
HMGB1P09429 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms