Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC4P09017 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.07■□□□□ 0.16
HOXC4P09017 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HOXC4P09017 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC4P09017 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.07■□□□□ 0.16
HOXC4P09017 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC4P09017 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
HOXC4P09017 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC4P09017 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC4P09017 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC4P09017 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
HOXC4P09017 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
HOXC4P09017 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HOXC4P09017 AC087499.5-201ENST00000452760 1342 ntBASIC16.06■□□□□ 0.16
HOXC4P09017 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.06■□□□□ 0.16
HOXC4P09017 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.06■□□□□ 0.16
HOXC4P09017 SPDYE17-201ENST00000412399 783 ntBASIC16.06■□□□□ 0.16
HOXC4P09017 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.06■□□□□ 0.16
HOXC4P09017 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.06■□□□□ 0.16
HOXC4P09017 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.06■□□□□ 0.16
HOXC4P09017 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.06■□□□□ 0.16
HOXC4P09017 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 AL079307.3-201ENST00000556114 283 ntBASIC16.06■□□□□ 0.16
HOXC4P09017 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.06■□□□□ 0.16
HOXC4P09017 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 MIR4745-201ENST00000577608 62 ntBASIC16.06■□□□□ 0.16
HOXC4P09017 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.06■□□□□ 0.16
HOXC4P09017 MIR4321-201ENST00000592276 80 ntBASIC16.06■□□□□ 0.16
HOXC4P09017 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.06■□□□□ 0.16
HOXC4P09017 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.06■□□□□ 0.16
HOXC4P09017 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HOXC4P09017 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HOXC4P09017 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HOXC4P09017 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HOXC4P09017 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.05■□□□□ 0.16
HOXC4P09017 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.05■□□□□ 0.16
HOXC4P09017 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
HOXC4P09017 RPL37AP1-201ENST00000412502 279 ntBASIC16.05■□□□□ 0.16
HOXC4P09017 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.05■□□□□ 0.16
HOXC4P09017 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 MTND6P24-201ENST00000440466 518 ntBASIC16.05■□□□□ 0.16
HOXC4P09017 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.05■□□□□ 0.16
HOXC4P09017 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.05■□□□□ 0.16
HOXC4P09017 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.05■□□□□ 0.16
HOXC4P09017 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.05■□□□□ 0.16
HOXC4P09017 TEX28P1-201ENST00000613479 1221 ntBASIC16.05■□□□□ 0.16
HOXC4P09017 TEX28P2-201ENST00000617764 1221 ntBASIC16.05■□□□□ 0.16
HOXC4P09017 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HOXC4P09017 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.05■□□□□ 0.16
HOXC4P09017 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.05■□□□□ 0.16
HOXC4P09017 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.05■□□□□ 0.16
HOXC4P09017 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.05■□□□□ 0.16
HOXC4P09017 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HOXC4P09017 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
HOXC4P09017 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.04■□□□□ 0.16
HOXC4P09017 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.04■□□□□ 0.16
HOXC4P09017 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.04■□□□□ 0.16
HOXC4P09017 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HOXC4P09017 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms