Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.4■□□□□ 0.38
APOEP02649 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
APOEP02649 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.39■□□□□ 0.38
APOEP02649 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
APOEP02649 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
APOEP02649 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.39■□□□□ 0.38
APOEP02649 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
APOEP02649 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 RNU1-129P-201ENST00000384064 167 ntBASIC17.39■□□□□ 0.37
APOEP02649 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 RPSAP43-201ENST00000402237 625 ntBASIC17.39■□□□□ 0.37
APOEP02649 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.39■□□□□ 0.37
APOEP02649 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.39■□□□□ 0.37
APOEP02649 MKNK2P1-201ENST00000437526 628 ntBASIC17.39■□□□□ 0.37
APOEP02649 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.39■□□□□ 0.37
APOEP02649 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.39■□□□□ 0.37
APOEP02649 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 ALG1L5P-201ENST00000482043 771 ntBASIC17.39■□□□□ 0.37
APOEP02649 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.39■□□□□ 0.37
APOEP02649 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 AC005829.1-201ENST00000570002 483 ntBASIC17.39■□□□□ 0.37
APOEP02649 AP002472.1-201ENST00000577490 586 ntBASIC17.39■□□□□ 0.37
APOEP02649 U1.21-201ENST00000580816 167 ntBASIC17.39■□□□□ 0.37
APOEP02649 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.39■□□□□ 0.37
APOEP02649 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
APOEP02649 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
APOEP02649 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
APOEP02649 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.38■□□□□ 0.37
APOEP02649 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
APOEP02649 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
APOEP02649 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 AC092171.3-201ENST00000610122 2651 ntBASIC17.38■□□□□ 0.37
APOEP02649 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.38■□□□□ 0.37
APOEP02649 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
APOEP02649 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.38■□□□□ 0.37
APOEP02649 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 HTR5BP-201ENST00000430851 1154 ntBASIC17.38■□□□□ 0.37
APOEP02649 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.38■□□□□ 0.37
APOEP02649 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.38■□□□□ 0.37
APOEP02649 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
APOEP02649 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.38■□□□□ 0.37
APOEP02649 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
APOEP02649 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.38■□□□□ 0.37
APOEP02649 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.38■□□□□ 0.37
APOEP02649 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.38■□□□□ 0.37
APOEP02649 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms