Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC21.64■■□□□ 1.05
COL3A1P02461 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL3A1P02461 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL3A1P02461 CENPM-206ENST00000407253 818 ntTSL 2 BASIC21.64■■□□□ 1.05
COL3A1P02461 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.64■■□□□ 1.05
COL3A1P02461 HIST3H2BA-201ENST00000436555 524 ntBASIC21.64■■□□□ 1.05
COL3A1P02461 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.64■■□□□ 1.05
COL3A1P02461 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC21.64■■□□□ 1.05
COL3A1P02461 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL3A1P02461 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.64■■□□□ 1.05
COL3A1P02461 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC21.64■■□□□ 1.05
COL3A1P02461 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL3A1P02461 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL3A1P02461 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC21.63■■□□□ 1.05
COL3A1P02461 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL3A1P02461 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL3A1P02461 KRT8P12-202ENST00000472924 1397 ntBASIC21.63■■□□□ 1.05
COL3A1P02461 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL3A1P02461 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL3A1P02461 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC21.63■■□□□ 1.05
COL3A1P02461 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL3A1P02461 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC21.63■■□□□ 1.05
COL3A1P02461 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL3A1P02461 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC21.63■■□□□ 1.05
COL3A1P02461 CALY-203ENST00000368558 825 ntTSL 5 BASIC21.63■■□□□ 1.05
COL3A1P02461 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC21.63■■□□□ 1.05
COL3A1P02461 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL3A1P02461 FAM8A3P-201ENST00000427218 844 ntBASIC21.63■■□□□ 1.05
COL3A1P02461 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC21.63■■□□□ 1.05
COL3A1P02461 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
COL3A1P02461 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.63■■□□□ 1.05
COL3A1P02461 AC008738.7-201ENST00000609744 511 ntBASIC21.63■■□□□ 1.05
COL3A1P02461 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
COL3A1P02461 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
COL3A1P02461 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL3A1P02461 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL3A1P02461 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL3A1P02461 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL3A1P02461 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC21.62■■□□□ 1.05
COL3A1P02461 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL3A1P02461 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL3A1P02461 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
COL3A1P02461 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
COL3A1P02461 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.62■■□□□ 1.05
COL3A1P02461 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC21.62■■□□□ 1.05
COL3A1P02461 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL3A1P02461 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC21.62■■□□□ 1.05
COL3A1P02461 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC21.62■■□□□ 1.05
COL3A1P02461 MPI-209ENST00000564003 1195 ntTSL 2 BASIC21.62■■□□□ 1.05
COL3A1P02461 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL3A1P02461 AL589739.1-201ENST00000607720 493 ntBASIC21.62■■□□□ 1.05
COL3A1P02461 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC21.62■■□□□ 1.05
COL3A1P02461 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC21.62■■□□□ 1.05
COL3A1P02461 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL3A1P02461 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL3A1P02461 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.62■■□□□ 1.05
COL3A1P02461 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC21.61■■□□□ 1.05
COL3A1P02461 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
COL3A1P02461 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
COL3A1P02461 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
COL3A1P02461 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
COL3A1P02461 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 SPDYE18-201ENST00000510091 1050 ntBASIC21.61■■□□□ 1.05
COL3A1P02461 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.61■■□□□ 1.05
COL3A1P02461 AC027369.6-201ENST00000525520 931 ntBASIC21.61■■□□□ 1.05
COL3A1P02461 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC21.61■■□□□ 1.05
COL3A1P02461 AC009407.1-201ENST00000568958 598 ntBASIC21.61■■□□□ 1.05
COL3A1P02461 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.61■■□□□ 1.05
COL3A1P02461 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.61■■□□□ 1.05
COL3A1P02461 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC21.61■■□□□ 1.05
COL3A1P02461 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
COL3A1P02461 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
COL3A1P02461 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC21.61■■□□□ 1.05
COL3A1P02461 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC21.61■■□□□ 1.05
COL3A1P02461 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
COL3A1P02461 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL3A1P02461 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL3A1P02461 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL3A1P02461 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC21.6■■□□□ 1.05
COL3A1P02461 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL3A1P02461 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC21.6■■□□□ 1.05
COL3A1P02461 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
COL3A1P02461 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL3A1P02461 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL3A1P02461 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC21.6■■□□□ 1.05
COL3A1P02461 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.6■■□□□ 1.05
COL3A1P02461 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.6■■□□□ 1.05
COL3A1P02461 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms