Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 AC006538.1-201ENST00000567905 1585 ntBASIC16.14■□□□□ 0.17
TNFP01375 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 GPAA1P2-202ENST00000606848 1787 ntBASIC16.14■□□□□ 0.17
TNFP01375 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.14■□□□□ 0.17
TNFP01375 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.14■□□□□ 0.17
TNFP01375 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.14■□□□□ 0.17
TNFP01375 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.14■□□□□ 0.17
TNFP01375 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 HLA-J-202ENST00000469281 1241 ntBASIC16.14■□□□□ 0.17
TNFP01375 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.14■□□□□ 0.17
TNFP01375 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.14■□□□□ 0.17
TNFP01375 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.14■□□□□ 0.17
TNFP01375 AC073592.8-201ENST00000624126 511 ntBASIC16.14■□□□□ 0.17
TNFP01375 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TNFP01375 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TNFP01375 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.13■□□□□ 0.17
TNFP01375 AL035456.1-201ENST00000456064 1369 ntBASIC16.13■□□□□ 0.17
TNFP01375 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.13■□□□□ 0.17
TNFP01375 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TNFP01375 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 AP001094.4-201ENST00000579008 2176 ntBASIC16.13■□□□□ 0.17
TNFP01375 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TNFP01375 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
TNFP01375 AC241585.1-201ENST00000433527 519 ntBASIC16.13■□□□□ 0.17
TNFP01375 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.13■□□□□ 0.17
TNFP01375 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.13■□□□□ 0.17
TNFP01375 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TNFP01375 AL031731.1-201ENST00000642131 2094 ntBASIC16.13■□□□□ 0.17
TNFP01375 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.13■□□□□ 0.17
TNFP01375 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.13■□□□□ 0.17
TNFP01375 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TNFP01375 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.12■□□□□ 0.17
TNFP01375 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.12■□□□□ 0.17
TNFP01375 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.12■□□□□ 0.17
TNFP01375 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TNFP01375 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 AL603756.1-201ENST00000606511 2163 ntBASIC16.12■□□□□ 0.17
TNFP01375 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.12■□□□□ 0.17
TNFP01375 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.12■□□□□ 0.17
TNFP01375 AC092580.3-201ENST00000430932 139 ntBASIC16.12■□□□□ 0.17
TNFP01375 AC093724.1-201ENST00000448659 1027 ntBASIC16.12■□□□□ 0.17
TNFP01375 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
TNFP01375 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.12■□□□□ 0.17
TNFP01375 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.12■□□□□ 0.17
TNFP01375 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.12■□□□□ 0.17
TNFP01375 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.12■□□□□ 0.17
TNFP01375 AC024267.1-201ENST00000582320 895 ntBASIC16.12■□□□□ 0.17
TNFP01375 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.12■□□□□ 0.17
TNFP01375 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.12■□□□□ 0.17
TNFP01375 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TNFP01375 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TNFP01375 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms