Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 AC124067.4-201ENST00000519691 2379 ntBASIC17.67■□□□□ 0.42
CISHQ9NSE2 PCDHB19P-201ENST00000570871 2371 ntBASIC17.67■□□□□ 0.42
CISHQ9NSE2 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 KRT18P34-201ENST00000488218 1270 ntBASIC17.67■□□□□ 0.42
CISHQ9NSE2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 RARRES2P8-201ENST00000566335 367 ntBASIC17.67■□□□□ 0.42
CISHQ9NSE2 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 AC010327.4-202ENST00000591484 748 ntBASIC17.67■□□□□ 0.42
CISHQ9NSE2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 AC092364.2-201ENST00000596710 2692 ntBASIC17.67■□□□□ 0.42
CISHQ9NSE2 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.67■□□□□ 0.42
CISHQ9NSE2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CISHQ9NSE2 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
CISHQ9NSE2 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 GPX1P2-201ENST00000429271 606 ntBASIC17.66■□□□□ 0.42
CISHQ9NSE2 AL671277.1-201ENST00000429656 993 ntBASIC17.66■□□□□ 0.42
CISHQ9NSE2 ADH5P3-201ENST00000433842 1137 ntBASIC17.66■□□□□ 0.42
CISHQ9NSE2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 AC092865.5-201ENST00000545435 363 ntBASIC17.66■□□□□ 0.42
CISHQ9NSE2 AC005829.1-201ENST00000570002 483 ntBASIC17.66■□□□□ 0.42
CISHQ9NSE2 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CISHQ9NSE2 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.66■□□□□ 0.42
CISHQ9NSE2 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.65■□□□□ 0.42
CISHQ9NSE2 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.65■□□□□ 0.42
CISHQ9NSE2 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.65■□□□□ 0.42
CISHQ9NSE2 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CISHQ9NSE2 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms