Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.18■□□□□ 0.34
PCDH9Q9HC56 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 AC108073.2-201ENST00000464002 357 ntBASIC17.18■□□□□ 0.34
PCDH9Q9HC56 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 RNA5SP415-201ENST00000517246 115 ntBASIC17.18■□□□□ 0.34
PCDH9Q9HC56 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 UNC93B6-202ENST00000528242 690 ntBASIC17.18■□□□□ 0.34
PCDH9Q9HC56 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 AC131009.4-201ENST00000624048 1740 ntBASIC17.18■□□□□ 0.34
PCDH9Q9HC56 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 AC008894.3-201ENST00000624324 3103 ntBASIC17.18■□□□□ 0.34
PCDH9Q9HC56 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 AC108751.1-201ENST00000490852 363 ntBASIC17.17■□□□□ 0.34
PCDH9Q9HC56 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 IL9RP2-201ENST00000423948 1312 ntBASIC17.17■□□□□ 0.34
PCDH9Q9HC56 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDH9Q9HC56 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 MRPL20P1-201ENST00000400819 433 ntBASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AL590627.1-203ENST00000421194 1026 ntBASIC17.16■□□□□ 0.34
PCDH9Q9HC56 SLC25A6P2-201ENST00000497974 877 ntBASIC17.16■□□□□ 0.34
PCDH9Q9HC56 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AC004790.2-201ENST00000623588 572 ntBASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms