Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 IGHV3-47-201ENST00000425060 335 ntBASIC14.57□□□□□ -0.08
NKX3-1Q99801 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 SIGLEC30P-201ENST00000455569 941 ntBASIC14.57□□□□□ -0.08
NKX3-1Q99801 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 KRT126P-201ENST00000549467 1181 ntBASIC14.57□□□□□ -0.08
NKX3-1Q99801 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 Z69720.1-201ENST00000601483 472 ntBASIC14.57□□□□□ -0.08
NKX3-1Q99801 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 AP000867.4-201ENST00000641616 219 ntBASIC14.57□□□□□ -0.08
NKX3-1Q99801 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 AL365203.3-201ENST00000609742 2057 ntBASIC14.57□□□□□ -0.08
NKX3-1Q99801 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 AP003680.1-201ENST00000598970 3660 ntBASIC14.56□□□□□ -0.08
NKX3-1Q99801 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 NUS1P2-201ENST00000417358 873 ntBASIC14.56□□□□□ -0.08
NKX3-1Q99801 THAP5-204ENST00000438865 868 ntTSL 2 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 NPAP1P7-201ENST00000613027 823 ntBASIC14.56□□□□□ -0.08
NKX3-1Q99801 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 AC243591.1-201ENST00000452967 1364 ntBASIC14.56□□□□□ -0.08
NKX3-1Q99801 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 PRAL-201ENST00000624952 3286 ntBASIC14.56□□□□□ -0.08
NKX3-1Q99801 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NKX3-1Q99801 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
NKX3-1Q99801 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms