Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CMTM3Q96MX0 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CMTM3Q96MX0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.33□□□□□ -0.11
CMTM3Q96MX0 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CMTM3Q96MX0 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 GPAA1P2-202ENST00000606848 1787 ntBASIC14.33□□□□□ -0.12
CMTM3Q96MX0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 AL020989.1-201ENST00000422979 469 ntBASIC14.33□□□□□ -0.12
CMTM3Q96MX0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 AC011840.4-201ENST00000578471 627 ntBASIC14.33□□□□□ -0.12
CMTM3Q96MX0 AC011467.2-201ENST00000598425 242 ntBASIC14.33□□□□□ -0.12
CMTM3Q96MX0 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.33□□□□□ -0.12
CMTM3Q96MX0 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 AC243591.1-201ENST00000452967 1364 ntBASIC14.33□□□□□ -0.12
CMTM3Q96MX0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 LINC01568-207ENST00000641790 1380 ntBASIC14.33□□□□□ -0.12
CMTM3Q96MX0 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CMTM3Q96MX0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 CCS-201ENST00000310190 942 ntTSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 AC246785.2-201ENST00000432512 513 ntBASIC14.32□□□□□ -0.12
CMTM3Q96MX0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 AC093827.2-201ENST00000512654 315 ntBASIC14.32□□□□□ -0.12
CMTM3Q96MX0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 MIR4492-201ENST00000581627 80 ntBASIC14.32□□□□□ -0.12
CMTM3Q96MX0 MIR4497-201ENST00000583208 89 ntBASIC14.32□□□□□ -0.12
CMTM3Q96MX0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 AC092919.2-201ENST00000623631 1645 ntBASIC14.32□□□□□ -0.12
CMTM3Q96MX0 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 UBC-206ENST00000538617 1303 ntTSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 AC063926.3-201ENST00000624734 5658 ntBASIC14.32□□□□□ -0.12
CMTM3Q96MX0 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CMTM3Q96MX0 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms