Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 AC140912.1-201ENST00000577171 1054 ntBASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
NPAS3Q8IXF0 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 AL353779.1-201ENST00000434793 351 ntBASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 ZNF890P-202ENST00000530367 1156 ntBASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 AC135586.1-201ENST00000539323 574 ntBASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 AL359881.2-201ENST00000602973 570 ntBASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NPAS3Q8IXF0 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 FZD10-202ENST00000539839 3282 ntBASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NPAS3Q8IXF0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 AC104794.3-201ENST00000566840 1248 ntBASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms