Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
VRK3Q8IV63 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VRK3Q8IV63 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
VRK3Q8IV63 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VRK3Q8IV63 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VRK3Q8IV63 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VRK3Q8IV63 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VRK3Q8IV63 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VRK3Q8IV63 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
VRK3Q8IV63 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
VRK3Q8IV63 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VRK3Q8IV63 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.21■□□□□ 0.18
VRK3Q8IV63 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.21■□□□□ 0.18
VRK3Q8IV63 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 BX842568.4-201ENST00000421222 227 ntBASIC16.2■□□□□ 0.18
VRK3Q8IV63 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 AC010327.4-202ENST00000591484 748 ntBASIC16.2■□□□□ 0.18
VRK3Q8IV63 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 AC020765.3-201ENST00000613051 740 ntBASIC16.2■□□□□ 0.18
VRK3Q8IV63 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.2■□□□□ 0.18
VRK3Q8IV63 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VRK3Q8IV63 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 AL355306.1-201ENST00000415580 579 ntBASIC16.19■□□□□ 0.18
VRK3Q8IV63 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 HTR5BP-201ENST00000430851 1154 ntBASIC16.19■□□□□ 0.18
VRK3Q8IV63 ADH5P3-201ENST00000433842 1137 ntBASIC16.19■□□□□ 0.18
VRK3Q8IV63 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 WASH6P-202ENST00000359512 1437 ntBASIC16.19■□□□□ 0.18
VRK3Q8IV63 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VRK3Q8IV63 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.19■□□□□ 0.18
VRK3Q8IV63 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms