Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.24■□□□□ 0.67
SF3A1Q15459 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 AC073621.1-201ENST00000392730 636 ntBASIC19.24■□□□□ 0.67
SF3A1Q15459 EMBP1-201ENST00000458200 901 ntBASIC19.24■□□□□ 0.67
SF3A1Q15459 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.24■□□□□ 0.67
SF3A1Q15459 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.24■□□□□ 0.67
SF3A1Q15459 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.24■□□□□ 0.67
SF3A1Q15459 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.24■□□□□ 0.67
SF3A1Q15459 TP73-AS1-207ENST00000624167 988 ntBASIC19.24■□□□□ 0.67
SF3A1Q15459 AL139011.1-202ENST00000642063 584 ntBASIC19.24■□□□□ 0.67
SF3A1Q15459 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.24■□□□□ 0.67
SF3A1Q15459 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.24■□□□□ 0.67
SF3A1Q15459 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.24■□□□□ 0.67
SF3A1Q15459 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.23■□□□□ 0.67
SF3A1Q15459 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SF3A1Q15459 RNPS1P1-201ENST00000507437 918 ntBASIC19.23■□□□□ 0.67
SF3A1Q15459 OR7E14P-202ENST00000530490 1290 ntBASIC19.23■□□□□ 0.67
SF3A1Q15459 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.23■□□□□ 0.67
SF3A1Q15459 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.23■□□□□ 0.67
SF3A1Q15459 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SF3A1Q15459 MPDU1-223ENST00000582151 728 ntBASIC19.23■□□□□ 0.67
SF3A1Q15459 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SF3A1Q15459 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 AL513523.2-202ENST00000427283 2040 ntBASIC19.23■□□□□ 0.67
SF3A1Q15459 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.23■□□□□ 0.67
SF3A1Q15459 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.23■□□□□ 0.67
SF3A1Q15459 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 ING5-213ENST00000636051 4199 ntTSL 5 BASIC19.23■□□□□ 0.67
SF3A1Q15459 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SF3A1Q15459 PCDHA1-201ENST00000378133 2726 ntBASIC19.23■□□□□ 0.67
SF3A1Q15459 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.23■□□□□ 0.67
SF3A1Q15459 ME2P1-201ENST00000426028 1970 ntBASIC19.23■□□□□ 0.67
SF3A1Q15459 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 NORAD-201ENST00000565493 5339 ntBASIC19.22■□□□□ 0.67
SF3A1Q15459 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.22■□□□□ 0.67
SF3A1Q15459 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.22■□□□□ 0.67
SF3A1Q15459 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SF3A1Q15459 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.22■□□□□ 0.67
SF3A1Q15459 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.22■□□□□ 0.67
SF3A1Q15459 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.22■□□□□ 0.67
SF3A1Q15459 RPS15P9-201ENST00000494093 319 ntBASIC19.22■□□□□ 0.67
SF3A1Q15459 MIR4492-201ENST00000581627 80 ntBASIC19.22■□□□□ 0.67
SF3A1Q15459 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.22■□□□□ 0.67
SF3A1Q15459 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.22■□□□□ 0.67
SF3A1Q15459 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.22■□□□□ 0.67
SF3A1Q15459 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.22■□□□□ 0.67
SF3A1Q15459 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SF3A1Q15459 AL671710.1-201ENST00000610245 2349 ntBASIC19.22■□□□□ 0.67
SF3A1Q15459 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SF3A1Q15459 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SF3A1Q15459 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.21■□□□□ 0.67
SF3A1Q15459 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SF3A1Q15459 HNRNPDP1-201ENST00000439535 754 ntBASIC19.21■□□□□ 0.67
SF3A1Q15459 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms