Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
TFF3Q07654 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.57□□□□□ -0.08
TFF3Q07654 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 AC009477.1-201ENST00000452936 217 ntBASIC14.57□□□□□ -0.08
TFF3Q07654 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.57□□□□□ -0.08
TFF3Q07654 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.57□□□□□ -0.08
TFF3Q07654 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.57□□□□□ -0.08
TFF3Q07654 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
TFF3Q07654 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.57□□□□□ -0.08
TFF3Q07654 AC003101.2-201ENST00000612557 442 ntBASIC14.57□□□□□ -0.08
TFF3Q07654 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.57□□□□□ -0.08
TFF3Q07654 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
TFF3Q07654 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 KRT8P49-201ENST00000604166 1432 ntBASIC14.57□□□□□ -0.08
TFF3Q07654 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
TFF3Q07654 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.56□□□□□ -0.08
TFF3Q07654 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 AC093525.9-201ENST00000624961 1746 ntBASIC14.56□□□□□ -0.08
TFF3Q07654 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
TFF3Q07654 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.56□□□□□ -0.08
TFF3Q07654 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.56□□□□□ -0.08
TFF3Q07654 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.56□□□□□ -0.08
TFF3Q07654 AC007274.1-201ENST00000439805 662 ntBASIC14.56□□□□□ -0.08
TFF3Q07654 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.56□□□□□ -0.08
TFF3Q07654 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.56□□□□□ -0.08
TFF3Q07654 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.56□□□□□ -0.08
TFF3Q07654 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.56□□□□□ -0.08
TFF3Q07654 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
TFF3Q07654 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 AC004233.3-201ENST00000607794 1269 ntBASIC14.56□□□□□ -0.08
TFF3Q07654 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TFF3Q07654 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC14.56□□□□□ -0.08
TFF3Q07654 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
TFF3Q07654 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 AD000864.1-201ENST00000624076 2295 ntBASIC14.55□□□□□ -0.08
TFF3Q07654 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC14.55□□□□□ -0.08
TFF3Q07654 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC14.55□□□□□ -0.08
TFF3Q07654 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.55□□□□□ -0.08
TFF3Q07654 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.55□□□□□ -0.08
TFF3Q07654 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
TFF3Q07654 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.55□□□□□ -0.08
TFF3Q07654 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.55□□□□□ -0.08
TFF3Q07654 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.55□□□□□ -0.08
TFF3Q07654 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.55□□□□□ -0.08
TFF3Q07654 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.55□□□□□ -0.08
TFF3Q07654 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.55□□□□□ -0.08
TFF3Q07654 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.55□□□□□ -0.08
TFF3Q07654 KRT18P34-201ENST00000488218 1270 ntBASIC14.55□□□□□ -0.08
TFF3Q07654 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.55□□□□□ -0.08
TFF3Q07654 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.55□□□□□ -0.08
TFF3Q07654 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TFF3Q07654 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.55□□□□□ -0.08
TFF3Q07654 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.55□□□□□ -0.08
TFF3Q07654 AL008721.1-201ENST00000609964 604 ntBASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms