Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 LINC00895-201ENST00000629028 1637 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
ABCA4P78363 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC14.26□□□□□ -0.13
ABCA4P78363 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.26□□□□□ -0.13
ABCA4P78363 AC106886.1-201ENST00000568660 600 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 AL132655.2-201ENST00000596276 594 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 AC017083.2-201ENST00000608069 979 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 AC116353.5-201ENST00000638148 1699 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.26□□□□□ -0.13
ABCA4P78363 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
ABCA4P78363 AC073439.1-201ENST00000624121 1774 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
ABCA4P78363 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.25□□□□□ -0.13
ABCA4P78363 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
ABCA4P78363 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
ABCA4P78363 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 HLA-H-201ENST00000383620 1096 ntBASIC14.25□□□□□ -0.13
ABCA4P78363 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.25□□□□□ -0.13
ABCA4P78363 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.25□□□□□ -0.13
ABCA4P78363 BANF1P1-201ENST00000553684 263 ntBASIC14.25□□□□□ -0.13
ABCA4P78363 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.25□□□□□ -0.13
ABCA4P78363 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 AC108860.2-201ENST00000562760 2183 ntBASIC14.25□□□□□ -0.13
ABCA4P78363 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 AL391825.1-201ENST00000457671 1364 ntBASIC14.25□□□□□ -0.13
ABCA4P78363 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
ABCA4P78363 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.25□□□□□ -0.13
ABCA4P78363 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
ABCA4P78363 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.25□□□□□ -0.13
ABCA4P78363 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA4P78363 AC079776.1-201ENST00000401540 1152 ntBASIC14.25□□□□□ -0.13
ABCA4P78363 HLA-V-204ENST00000476601 1289 ntBASIC14.25□□□□□ -0.13
ABCA4P78363 PRYP6-201ENST00000514804 343 ntBASIC14.25□□□□□ -0.13
ABCA4P78363 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.25□□□□□ -0.13
ABCA4P78363 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.25□□□□□ -0.13
ABCA4P78363 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA4P78363 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA4P78363 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms