Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.37■□□□□ 0.37
HDAC4P56524 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC4P56524 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.37■□□□□ 0.37
HDAC4P56524 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.37■□□□□ 0.37
HDAC4P56524 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.36■□□□□ 0.37
HDAC4P56524 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC4P56524 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.36■□□□□ 0.37
HDAC4P56524 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.36■□□□□ 0.37
HDAC4P56524 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC4P56524 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.36■□□□□ 0.37
HDAC4P56524 AP000347.1-202ENST00000435868 847 ntBASIC17.36■□□□□ 0.37
HDAC4P56524 RNA5SP416-201ENST00000516838 111 ntBASIC17.36■□□□□ 0.37
HDAC4P56524 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC4P56524 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HDAC4P56524 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.36■□□□□ 0.37
HDAC4P56524 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.36■□□□□ 0.37
HDAC4P56524 AL031055.1-201ENST00000606362 631 ntBASIC17.36■□□□□ 0.37
HDAC4P56524 AL513190.1-201ENST00000621254 727 ntBASIC17.36■□□□□ 0.37
HDAC4P56524 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC4P56524 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC4P56524 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.36■□□□□ 0.37
HDAC4P56524 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HDAC4P56524 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC4P56524 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
HDAC4P56524 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 GPAA1P2-202ENST00000606848 1787 ntBASIC17.35■□□□□ 0.37
HDAC4P56524 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 AL662844.4-201ENST00000606367 2838 ntBASIC17.35■□□□□ 0.37
HDAC4P56524 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 ME2P1-201ENST00000426028 1970 ntBASIC17.35■□□□□ 0.37
HDAC4P56524 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 MIR574-201ENST00000385209 96 ntBASIC17.35■□□□□ 0.37
HDAC4P56524 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.35■□□□□ 0.37
HDAC4P56524 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
HDAC4P56524 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.35■□□□□ 0.37
HDAC4P56524 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 MIR3909-201ENST00000579518 119 ntBASIC17.35■□□□□ 0.37
HDAC4P56524 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.35■□□□□ 0.37
HDAC4P56524 AL671883.3-201ENST00000603274 991 ntBASIC17.35■□□□□ 0.37
HDAC4P56524 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 AC092865.6-201ENST00000642101 219 ntBASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms