Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.18■□□□□ 0.5
CLCN3P51790 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.18■□□□□ 0.5
CLCN3P51790 AC080080.1-201ENST00000625121 2420 ntBASIC18.18■□□□□ 0.5
CLCN3P51790 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCN3P51790 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 AC006538.1-201ENST00000567905 1585 ntBASIC18.17■□□□□ 0.5
CLCN3P51790 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CLCN3P51790 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CLCN3P51790 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 UBALD1-205ENST00000590891 2641 ntBASIC18.17■□□□□ 0.5
CLCN3P51790 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.17■□□□□ 0.5
CLCN3P51790 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 AJ011932.1-201ENST00000621707 465 ntBASIC18.17■□□□□ 0.5
CLCN3P51790 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.17■□□□□ 0.5
CLCN3P51790 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCN3P51790 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
CLCN3P51790 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CLCN3P51790 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CLCN3P51790 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.16■□□□□ 0.5
CLCN3P51790 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.16■□□□□ 0.5
CLCN3P51790 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.16■□□□□ 0.5
CLCN3P51790 FAM220BP-201ENST00000377689 816 ntBASIC18.16■□□□□ 0.5
CLCN3P51790 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.16■□□□□ 0.5
CLCN3P51790 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.16■□□□□ 0.5
CLCN3P51790 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.16■□□□□ 0.5
CLCN3P51790 AC093724.1-201ENST00000448659 1027 ntBASIC18.16■□□□□ 0.5
CLCN3P51790 UGT1A2P-201ENST00000454886 866 ntBASIC18.16■□□□□ 0.5
CLCN3P51790 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 AC098859.1-201ENST00000502915 1238 ntBASIC18.16■□□□□ 0.5
CLCN3P51790 RNA5SP410-201ENST00000516285 106 ntBASIC18.16■□□□□ 0.5
CLCN3P51790 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.16■□□□□ 0.5
CLCN3P51790 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 AC007967.4-201ENST00000614700 386 ntBASIC18.16■□□□□ 0.5
CLCN3P51790 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CLCN3P51790 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CLCN3P51790 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCN3P51790 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.15■□□□□ 0.5
CLCN3P51790 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.15■□□□□ 0.5
CLCN3P51790 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCN3P51790 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.15■□□□□ 0.5
CLCN3P51790 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.15■□□□□ 0.5
CLCN3P51790 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.15■□□□□ 0.5
CLCN3P51790 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms