Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CYP2A7P1-201ENST00000595391 815 ntBASIC15.24■□□□□ 0.03
RFC3P40938 AP001350.2-201ENST00000625104 1094 ntBASIC15.24■□□□□ 0.03
RFC3P40938 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RFC3P40938 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.24■□□□□ 0.03
RFC3P40938 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.24■□□□□ 0.03
RFC3P40938 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.24■□□□□ 0.03
RFC3P40938 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 AC068418.2-201ENST00000577309 3703 ntBASIC15.24■□□□□ 0.03
RFC3P40938 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.23■□□□□ 0.03
RFC3P40938 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.23■□□□□ 0.03
RFC3P40938 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.23■□□□□ 0.03
RFC3P40938 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.23■□□□□ 0.03
RFC3P40938 AC092474.2-201ENST00000424288 719 ntBASIC15.23■□□□□ 0.03
RFC3P40938 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.23■□□□□ 0.03
RFC3P40938 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.23■□□□□ 0.03
RFC3P40938 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.23■□□□□ 0.03
RFC3P40938 AC009093.7-201ENST00000623853 1223 ntBASIC15.23■□□□□ 0.03
RFC3P40938 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.23■□□□□ 0.03
RFC3P40938 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
RFC3P40938 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.23■□□□□ 0.03
RFC3P40938 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFC3P40938 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
RFC3P40938 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.22■□□□□ 0.03
RFC3P40938 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
RFC3P40938 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RFC3P40938 AC016027.1-202ENST00000607927 1699 ntBASIC15.22■□□□□ 0.03
RFC3P40938 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RFC3P40938 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
RFC3P40938 AKAP8P1-201ENST00000434743 1349 ntBASIC15.22■□□□□ 0.03
RFC3P40938 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RFC3P40938 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RFC3P40938 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 MIR770-201ENST00000390219 98 ntBASIC15.22■□□□□ 0.03
RFC3P40938 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
RFC3P40938 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.22■□□□□ 0.03
RFC3P40938 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.22■□□□□ 0.03
RFC3P40938 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RFC3P40938 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.22■□□□□ 0.03
RFC3P40938 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
RFC3P40938 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFC3P40938 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms