Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 AC079328.2-201ENST00000561241 3354 ntBASIC16.3■□□□□ 0.2
SHMT2P34897 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.29■□□□□ 0.2
SHMT2P34897 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.29■□□□□ 0.2
SHMT2P34897 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.29■□□□□ 0.2
SHMT2P34897 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.29■□□□□ 0.2
SHMT2P34897 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SHMT2P34897 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 HMGA1P7-201ENST00000406908 502 ntBASIC16.29■□□□□ 0.2
SHMT2P34897 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.29■□□□□ 0.2
SHMT2P34897 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.29■□□□□ 0.2
SHMT2P34897 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.29■□□□□ 0.2
SHMT2P34897 MIR4492-201ENST00000581627 80 ntBASIC16.29■□□□□ 0.2
SHMT2P34897 C20orf181-201ENST00000623918 480 ntBASIC16.29■□□□□ 0.2
SHMT2P34897 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.29■□□□□ 0.2
SHMT2P34897 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.29■□□□□ 0.2
SHMT2P34897 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SHMT2P34897 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.29■□□□□ 0.2
SHMT2P34897 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.29■□□□□ 0.2
SHMT2P34897 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.29■□□□□ 0.2
SHMT2P34897 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHMT2P34897 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
SHMT2P34897 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 AC006449.5-201ENST00000610658 2098 ntBASIC16.28■□□□□ 0.2
SHMT2P34897 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 AC092171.3-201ENST00000610122 2651 ntBASIC16.28■□□□□ 0.2
SHMT2P34897 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SHMT2P34897 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 UPF3AP3-201ENST00000420996 769 ntBASIC16.28■□□□□ 0.2
SHMT2P34897 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.28■□□□□ 0.2
SHMT2P34897 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.28■□□□□ 0.2
SHMT2P34897 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SHMT2P34897 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.28■□□□□ 0.2
SHMT2P34897 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.28■□□□□ 0.2
SHMT2P34897 AC013467.2-201ENST00000605472 835 ntBASIC16.28■□□□□ 0.2
SHMT2P34897 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.28■□□□□ 0.2
SHMT2P34897 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SHMT2P34897 AC132872.4-202ENST00000622924 2756 ntBASIC16.28■□□□□ 0.2
SHMT2P34897 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SHMT2P34897 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHMT2P34897 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
SHMT2P34897 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.27■□□□□ 0.2
SHMT2P34897 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 LINC00895-201ENST00000629028 1637 ntBASIC16.27■□□□□ 0.2
SHMT2P34897 RNF216P1-203ENST00000404404 2427 ntBASIC16.27■□□□□ 0.2
SHMT2P34897 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.27■□□□□ 0.2
SHMT2P34897 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.27■□□□□ 0.2
SHMT2P34897 GPX1P2-201ENST00000429271 606 ntBASIC16.27■□□□□ 0.2
SHMT2P34897 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.27■□□□□ 0.2
SHMT2P34897 AC140658.5-201ENST00000438532 169 ntBASIC16.27■□□□□ 0.2
SHMT2P34897 AC112191.1-201ENST00000523689 701 ntBASIC16.27■□□□□ 0.2
SHMT2P34897 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 AC010327.4-202ENST00000591484 748 ntBASIC16.27■□□□□ 0.2
SHMT2P34897 CYP2A7P1-201ENST00000595391 815 ntBASIC16.27■□□□□ 0.2
SHMT2P34897 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHMT2P34897 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms