Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
COL5A3P25940 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A3P25940 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.53■□□□□ 0.88
COL5A3P25940 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A3P25940 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
COL5A3P25940 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 MIR1908-201ENST00000410394 80 ntBASIC20.53■□□□□ 0.88
COL5A3P25940 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC20.53■□□□□ 0.88
COL5A3P25940 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
COL5A3P25940 AC068587.3-201ENST00000526613 355 ntBASIC20.53■□□□□ 0.88
COL5A3P25940 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A3P25940 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL5A3P25940 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A3P25940 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC20.53■□□□□ 0.88
COL5A3P25940 ABBA01031660.1-201ENST00000635219 756 ntBASIC20.53■□□□□ 0.88
COL5A3P25940 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 U82695.1-201ENST00000635752 1889 ntBASIC20.53■□□□□ 0.88
COL5A3P25940 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.53■□□□□ 0.88
COL5A3P25940 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC20.53■□□□□ 0.88
COL5A3P25940 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
COL5A3P25940 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A3P25940 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
COL5A3P25940 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A3P25940 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC20.53■□□□□ 0.88
COL5A3P25940 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC20.53■□□□□ 0.88
COL5A3P25940 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A3P25940 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC20.53■□□□□ 0.88
COL5A3P25940 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
COL5A3P25940 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.53■□□□□ 0.88
COL5A3P25940 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC20.53■□□□□ 0.88
COL5A3P25940 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL5A3P25940 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.52■□□□□ 0.88
COL5A3P25940 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20.52■□□□□ 0.88
COL5A3P25940 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.52■□□□□ 0.88
COL5A3P25940 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
COL5A3P25940 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL5A3P25940 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A3P25940 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
COL5A3P25940 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A3P25940 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC20.52■□□□□ 0.88
COL5A3P25940 AC005229.1-201ENST00000392885 409 ntBASIC20.52■□□□□ 0.88
COL5A3P25940 CSF2RBP1-201ENST00000447905 391 ntBASIC20.52■□□□□ 0.88
COL5A3P25940 RN7SL399P-201ENST00000471648 279 ntBASIC20.52■□□□□ 0.88
COL5A3P25940 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC20.52■□□□□ 0.88
COL5A3P25940 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC20.52■□□□□ 0.88
COL5A3P25940 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A3P25940 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL5A3P25940 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A3P25940 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
COL5A3P25940 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC20.52■□□□□ 0.88
COL5A3P25940 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
COL5A3P25940 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL5A3P25940 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.51■□□□□ 0.87
COL5A3P25940 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL5A3P25940 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A3P25940 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A3P25940 AC068880.1-201ENST00000507289 2297 ntBASIC20.51■□□□□ 0.87
COL5A3P25940 TUBB1P2-201ENST00000422712 1306 ntBASIC20.51■□□□□ 0.87
COL5A3P25940 TUBB1P1-201ENST00000503144 1300 ntBASIC20.51■□□□□ 0.87
COL5A3P25940 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.51■□□□□ 0.87
COL5A3P25940 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.51■□□□□ 0.87
COL5A3P25940 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
COL5A3P25940 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A3P25940 BCYRN1-201ENST00000418539 200 ntBASIC20.51■□□□□ 0.87
COL5A3P25940 RPL13P2-201ENST00000440687 659 ntBASIC20.51■□□□□ 0.87
COL5A3P25940 AC245100.3-201ENST00000441281 285 ntBASIC20.51■□□□□ 0.87
COL5A3P25940 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A3P25940 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.51■□□□□ 0.87
COL5A3P25940 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC20.51■□□□□ 0.87
COL5A3P25940 PIGL-212ENST00000581006 554 ntTSL 4 BASIC20.51■□□□□ 0.87
COL5A3P25940 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL5A3P25940 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.51■□□□□ 0.87
COL5A3P25940 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.51■□□□□ 0.87
COL5A3P25940 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
COL5A3P25940 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A3P25940 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A3P25940 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
COL5A3P25940 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A3P25940 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
COL5A3P25940 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.51■□□□□ 0.87
COL5A3P25940 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms