Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 RNF165-205ENST00000588679 2904 ntBASIC16.91■□□□□ 0.3
VCANP13611 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
VCANP13611 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.91■□□□□ 0.3
VCANP13611 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
VCANP13611 SOCS2P1-201ENST00000417727 557 ntBASIC16.91■□□□□ 0.3
VCANP13611 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.91■□□□□ 0.3
VCANP13611 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.91■□□□□ 0.3
VCANP13611 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCANP13611 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.9■□□□□ 0.3
VCANP13611 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCANP13611 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.9■□□□□ 0.3
VCANP13611 KRT90P-201ENST00000549264 1064 ntBASIC16.9■□□□□ 0.3
VCANP13611 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VCANP13611 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VCANP13611 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCANP13611 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.9■□□□□ 0.3
VCANP13611 KRT8P37-201ENST00000451609 1420 ntBASIC16.9■□□□□ 0.3
VCANP13611 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCANP13611 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCANP13611 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.9■□□□□ 0.3
VCANP13611 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.9■□□□□ 0.3
VCANP13611 FGFR3P5-201ENST00000564496 886 ntBASIC16.9■□□□□ 0.3
VCANP13611 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.9■□□□□ 0.3
VCANP13611 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.9■□□□□ 0.3
VCANP13611 AC073352.2-201ENST00000609385 439 ntBASIC16.9■□□□□ 0.3
VCANP13611 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCANP13611 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCANP13611 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VCANP13611 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCANP13611 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.9■□□□□ 0.3
VCANP13611 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.89■□□□□ 0.3
VCANP13611 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
VCANP13611 CNN2P8-201ENST00000421872 913 ntBASIC16.89■□□□□ 0.3
VCANP13611 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.89■□□□□ 0.3
VCANP13611 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.89■□□□□ 0.3
VCANP13611 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VCANP13611 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
VCANP13611 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
VCANP13611 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.89■□□□□ 0.29
VCANP13611 AC079328.2-201ENST00000561241 3354 ntBASIC16.89■□□□□ 0.29
VCANP13611 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.89■□□□□ 0.29
VCANP13611 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VCANP13611 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.89■□□□□ 0.29
VCANP13611 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCANP13611 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCANP13611 CROCCP2-202ENST00000412962 2773 ntBASIC16.89■□□□□ 0.29
VCANP13611 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VCANP13611 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VCANP13611 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCANP13611 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCANP13611 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCANP13611 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCANP13611 NKAIN1P1-201ENST00000435754 582 ntBASIC16.89■□□□□ 0.29
VCANP13611 AC245884.6-201ENST00000515672 1067 ntBASIC16.89■□□□□ 0.29
VCANP13611 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.89■□□□□ 0.29
VCANP13611 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCANP13611 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
VCANP13611 EEF1DP1-201ENST00000585891 896 ntBASIC16.89■□□□□ 0.29
VCANP13611 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.89■□□□□ 0.29
VCANP13611 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
VCANP13611 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.88■□□□□ 0.29
VCANP13611 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.88■□□□□ 0.29
VCANP13611 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VCANP13611 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.88■□□□□ 0.29
VCANP13611 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 AP006547.1-201ENST00000563435 692 ntBASIC16.88■□□□□ 0.29
VCANP13611 RN7SL736P-201ENST00000613111 269 ntBASIC16.88■□□□□ 0.29
VCANP13611 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.88■□□□□ 0.29
VCANP13611 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.88■□□□□ 0.29
VCANP13611 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.88■□□□□ 0.29
VCANP13611 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
VCANP13611 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.88■□□□□ 0.29
VCANP13611 ACTG1P3-201ENST00000431775 1114 ntBASIC16.88■□□□□ 0.29
VCANP13611 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.88■□□□□ 0.29
VCANP13611 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VCANP13611 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.88■□□□□ 0.29
VCANP13611 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
VCANP13611 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.88■□□□□ 0.29
VCANP13611 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
VCANP13611 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms