Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.97■□□□□ 0.31
COL6A3P12111 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.97■□□□□ 0.31
COL6A3P12111 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A3P12111 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.97■□□□□ 0.31
COL6A3P12111 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.97■□□□□ 0.31
COL6A3P12111 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.97■□□□□ 0.31
COL6A3P12111 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
COL6A3P12111 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL6A3P12111 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.97■□□□□ 0.31
COL6A3P12111 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.97■□□□□ 0.31
COL6A3P12111 AC138951.2-201ENST00000623455 1161 ntBASIC16.97■□□□□ 0.31
COL6A3P12111 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A3P12111 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.97■□□□□ 0.31
COL6A3P12111 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.97■□□□□ 0.31
COL6A3P12111 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A3P12111 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A3P12111 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.96■□□□□ 0.31
COL6A3P12111 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.96■□□□□ 0.31
COL6A3P12111 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.31
COL6A3P12111 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
COL6A3P12111 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL6A3P12111 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A3P12111 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.96■□□□□ 0.31
COL6A3P12111 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL6A3P12111 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.96■□□□□ 0.31
COL6A3P12111 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.96■□□□□ 0.31
COL6A3P12111 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
COL6A3P12111 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL6A3P12111 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
COL6A3P12111 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A3P12111 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL6A3P12111 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.96■□□□□ 0.31
COL6A3P12111 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.96■□□□□ 0.31
COL6A3P12111 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC16.96■□□□□ 0.31
COL6A3P12111 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A3P12111 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL6A3P12111 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.95■□□□□ 0.3
COL6A3P12111 AC132192.2-201ENST00000596206 1147 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 AC025181.2-201ENST00000606994 802 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A3P12111 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL6A3P12111 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A3P12111 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.95■□□□□ 0.3
COL6A3P12111 AC015818.8-201ENST00000587907 1519 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A3P12111 AC012441.1-201ENST00000446669 685 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.95■□□□□ 0.3
COL6A3P12111 AC104596.2-201ENST00000512793 793 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.95■□□□□ 0.3
COL6A3P12111 AC027139.1-201ENST00000565286 951 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 AC005252.2-201ENST00000624630 1141 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 AC127024.7-201ENST00000625101 200 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL6A3P12111 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A3P12111 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A3P12111 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A3P12111 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 AC024681.1-201ENST00000521917 487 ntBASIC16.95■□□□□ 0.3
COL6A3P12111 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.95■□□□□ 0.3
COL6A3P12111 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A3P12111 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
COL6A3P12111 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A3P12111 CEP164P1-201ENST00000455142 418 ntBASIC16.94■□□□□ 0.3
COL6A3P12111 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.94■□□□□ 0.3
COL6A3P12111 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL6A3P12111 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
COL6A3P12111 AL645939.5-201ENST00000606834 243 ntBASIC16.94■□□□□ 0.3
COL6A3P12111 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms