Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A1P02462 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A1P02462 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A1P02462 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.02■□□□□ 0.79
COL4A1P02462 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A1P02462 AC080080.1-201ENST00000625121 2420 ntBASIC20.01■□□□□ 0.79
COL4A1P02462 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A1P02462 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL4A1P02462 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A1P02462 AZGP1P1-201ENST00000411909 902 ntBASIC20.01■□□□□ 0.79
COL4A1P02462 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.01■□□□□ 0.79
COL4A1P02462 KRT17P7-201ENST00000451704 1104 ntBASIC20.01■□□□□ 0.79
COL4A1P02462 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A1P02462 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.01■□□□□ 0.79
COL4A1P02462 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A1P02462 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A1P02462 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 AC009053.2-201ENST00000563701 2365 ntBASIC20.01■□□□□ 0.79
COL4A1P02462 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
COL4A1P02462 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A1P02462 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A1P02462 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A1P02462 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A1P02462 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
COL4A1P02462 U82695.1-201ENST00000635752 1889 ntBASIC20.01■□□□□ 0.79
COL4A1P02462 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
COL4A1P02462 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL4A1P02462 AP006294.1-201ENST00000415407 339 ntBASIC20■□□□□ 0.79
COL4A1P02462 AC112492.5-201ENST00000421897 457 ntBASIC20■□□□□ 0.79
COL4A1P02462 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC20■□□□□ 0.79
COL4A1P02462 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20■□□□□ 0.79
COL4A1P02462 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20■□□□□ 0.79
COL4A1P02462 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC20■□□□□ 0.79
COL4A1P02462 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20■□□□□ 0.79
COL4A1P02462 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
COL4A1P02462 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20■□□□□ 0.79
COL4A1P02462 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL4A1P02462 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 AL512384.1-201ENST00000406683 331 ntBASIC20■□□□□ 0.79
COL4A1P02462 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20■□□□□ 0.79
COL4A1P02462 EEF1DP4-201ENST00000446006 880 ntBASIC20■□□□□ 0.79
COL4A1P02462 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20■□□□□ 0.79
COL4A1P02462 TPRX2P-201ENST00000535362 881 ntBASIC20■□□□□ 0.79
COL4A1P02462 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20■□□□□ 0.79
COL4A1P02462 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL4A1P02462 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20■□□□□ 0.79
COL4A1P02462 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
COL4A1P02462 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20■□□□□ 0.79
COL4A1P02462 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A1P02462 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A1P02462 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
COL4A1P02462 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.99■□□□□ 0.79
COL4A1P02462 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.99■□□□□ 0.79
COL4A1P02462 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A1P02462 AL391825.1-201ENST00000457671 1364 ntBASIC19.99■□□□□ 0.79
COL4A1P02462 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A1P02462 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC19.99■□□□□ 0.79
COL4A1P02462 GALT-202ENST00000450095 1280 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A1P02462 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC19.99■□□□□ 0.79
COL4A1P02462 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
COL4A1P02462 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC19.99■□□□□ 0.79
COL4A1P02462 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A1P02462 MIR4321-201ENST00000592276 80 ntBASIC19.99■□□□□ 0.79
COL4A1P02462 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A1P02462 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A1P02462 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A1P02462 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
COL4A1P02462 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A1P02462 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A1P02462 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A1P02462 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms