Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PRKNO60260 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.46■□□□□ 0.07
PRKNO60260 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
PRKNO60260 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.46■□□□□ 0.07
PRKNO60260 PRORSD1P-202ENST00000563365 2154 ntBASIC15.46■□□□□ 0.07
PRKNO60260 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PRKNO60260 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PRKNO60260 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PRKNO60260 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PRKNO60260 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PRKNO60260 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PRKNO60260 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PRKNO60260 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.06
PRKNO60260 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
PRKNO60260 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.46■□□□□ 0.06
PRKNO60260 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 AC092364.2-201ENST00000596710 2692 ntBASIC15.45■□□□□ 0.06
PRKNO60260 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 AC004461.1-201ENST00000412461 403 ntBASIC15.45■□□□□ 0.06
PRKNO60260 TFAMP1-201ENST00000412727 736 ntBASIC15.45■□□□□ 0.06
PRKNO60260 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 AC254562.1-201ENST00000417586 456 ntBASIC15.45■□□□□ 0.06
PRKNO60260 CNN2P11-201ENST00000429351 262 ntBASIC15.45■□□□□ 0.06
PRKNO60260 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 TIMM8BP1-201ENST00000452384 211 ntBASIC15.45■□□□□ 0.06
PRKNO60260 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 AC092183.1-201ENST00000469884 875 ntBASIC15.45■□□□□ 0.06
PRKNO60260 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
PRKNO60260 AL135744.1-201ENST00000565098 629 ntBASIC15.45■□□□□ 0.06
PRKNO60260 RARRES2P8-201ENST00000566335 367 ntBASIC15.45■□□□□ 0.06
PRKNO60260 MIR3909-201ENST00000579518 119 ntBASIC15.45■□□□□ 0.06
PRKNO60260 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 AC022145.2-201ENST00000598203 171 ntBASIC15.45■□□□□ 0.06
PRKNO60260 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.45■□□□□ 0.06
PRKNO60260 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.45■□□□□ 0.06
PRKNO60260 AC026120.1-201ENST00000611536 926 ntBASIC15.45■□□□□ 0.06
PRKNO60260 AL513210.1-201ENST00000629608 234 ntBASIC15.45■□□□□ 0.06
PRKNO60260 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
PRKNO60260 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
PRKNO60260 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKNO60260 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.45■□□□□ 0.06
PRKNO60260 AC016027.1-202ENST00000607927 1699 ntBASIC15.44■□□□□ 0.06
PRKNO60260 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.44■□□□□ 0.06
PRKNO60260 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PRKNO60260 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PRKNO60260 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PRKNO60260 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
PRKNO60260 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
PRKNO60260 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
PRKNO60260 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.44■□□□□ 0.06
PRKNO60260 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
PRKNO60260 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PRKNO60260 PMS2P4-201ENST00000412466 1052 ntBASIC15.44■□□□□ 0.06
PRKNO60260 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.44■□□□□ 0.06
PRKNO60260 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.44■□□□□ 0.06
PRKNO60260 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.44■□□□□ 0.06
PRKNO60260 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.44■□□□□ 0.06
PRKNO60260 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.44■□□□□ 0.06
PRKNO60260 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.44■□□□□ 0.06
PRKNO60260 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.44■□□□□ 0.06
PRKNO60260 AC243562.1-201ENST00000560672 389 ntBASIC15.44■□□□□ 0.06
PRKNO60260 SNHG9-202ENST00000564014 471 ntBASIC15.44■□□□□ 0.06
PRKNO60260 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.44■□□□□ 0.06
PRKNO60260 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
PRKNO60260 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
PRKNO60260 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms