Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.59■□□□□ 0.57
MSH4O15457 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.59■□□□□ 0.57
MSH4O15457 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.59■□□□□ 0.57
MSH4O15457 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.59■□□□□ 0.57
MSH4O15457 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MSH4O15457 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.59■□□□□ 0.57
MSH4O15457 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.58■□□□□ 0.57
MSH4O15457 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.58■□□□□ 0.57
MSH4O15457 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MSH4O15457 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.58■□□□□ 0.57
MSH4O15457 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSH4O15457 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MSH4O15457 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
MSH4O15457 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.57
MSH4O15457 LINC01144-201ENST00000626198 1710 ntBASIC18.58■□□□□ 0.57
MSH4O15457 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
MSH4O15457 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
MSH4O15457 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.58■□□□□ 0.57
MSH4O15457 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
MSH4O15457 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.58■□□□□ 0.56
MSH4O15457 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.58■□□□□ 0.56
MSH4O15457 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.58■□□□□ 0.56
MSH4O15457 RBPMS2P1-201ENST00000437762 623 ntBASIC18.58■□□□□ 0.56
MSH4O15457 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.58■□□□□ 0.56
MSH4O15457 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.58■□□□□ 0.56
MSH4O15457 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.58■□□□□ 0.56
MSH4O15457 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 LINC00628-201ENST00000628516 1289 ntBASIC18.58■□□□□ 0.56
MSH4O15457 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.58■□□□□ 0.56
MSH4O15457 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.58■□□□□ 0.56
MSH4O15457 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
MSH4O15457 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
MSH4O15457 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
MSH4O15457 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSH4O15457 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH4O15457 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MSH4O15457 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.57■□□□□ 0.56
MSH4O15457 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.57■□□□□ 0.56
MSH4O15457 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.57■□□□□ 0.56
MSH4O15457 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.57■□□□□ 0.56
MSH4O15457 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH4O15457 AC093028.1-201ENST00000622998 982 ntBASIC18.57■□□□□ 0.56
MSH4O15457 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH4O15457 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.57■□□□□ 0.56
MSH4O15457 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH4O15457 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.57■□□□□ 0.56
MSH4O15457 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.57■□□□□ 0.56
MSH4O15457 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MSH4O15457 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH4O15457 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MSH4O15457 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.57■□□□□ 0.56
MSH4O15457 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.57■□□□□ 0.56
MSH4O15457 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.57■□□□□ 0.56
MSH4O15457 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH4O15457 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms