Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 EGFEM1P-202ENST00000431685 1563 ntBASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PCGF1Q9BSM1 AC002310.6-201ENST00000624451 1377 ntBASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 BCAR1-209ENST00000546196 1340 ntBASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 SLC25A1P3-201ENST00000395415 828 ntBASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 IGLL3P-201ENST00000412472 434 ntBASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 AC004832.2-201ENST00000426397 482 ntBASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 MTDHP5-201ENST00000598980 586 ntBASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 AC010507.1-201ENST00000633895 436 ntBASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCGF1Q9BSM1 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 UPF3AP3-201ENST00000420996 769 ntBASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 AL513190.1-201ENST00000621254 727 ntBASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 AC004877.2-201ENST00000623941 599 ntBASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
PCGF1Q9BSM1 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms