Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 AC106886.4-201ENST00000623557 2502 ntBASIC16.52■□□□□ 0.24
VPS35Q96QK1 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 AC112482.1-201ENST00000492080 688 ntBASIC16.52■□□□□ 0.24
VPS35Q96QK1 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 AL078644.1-201ENST00000609881 752 ntBASIC16.52■□□□□ 0.24
VPS35Q96QK1 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS35Q96QK1 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS35Q96QK1 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.52■□□□□ 0.23
VPS35Q96QK1 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS35Q96QK1 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS35Q96QK1 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
VPS35Q96QK1 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS35Q96QK1 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS35Q96QK1 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS35Q96QK1 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
VPS35Q96QK1 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS35Q96QK1 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.52■□□□□ 0.23
VPS35Q96QK1 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
VPS35Q96QK1 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS35Q96QK1 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 AL512652.2-201ENST00000625156 1716 ntBASIC16.51■□□□□ 0.23
VPS35Q96QK1 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ELL2P1-201ENST00000413990 1906 ntBASIC16.51■□□□□ 0.23
VPS35Q96QK1 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.51■□□□□ 0.23
VPS35Q96QK1 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS35Q96QK1 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms