Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
RTF1Q92541 AC105020.1-201ENST00000435356 2205 ntBASIC21.64■■□□□ 1.05
RTF1Q92541 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.64■■□□□ 1.05
RTF1Q92541 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RTF1Q92541 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RTF1Q92541 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RTF1Q92541 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RTF1Q92541 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
RTF1Q92541 AP3S2-216ENST00000617003 1561 ntBASIC21.63■■□□□ 1.05
RTF1Q92541 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RTF1Q92541 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.63■■□□□ 1.05
RTF1Q92541 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC21.63■■□□□ 1.05
RTF1Q92541 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC21.63■■□□□ 1.05
RTF1Q92541 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
RTF1Q92541 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
RTF1Q92541 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.63■■□□□ 1.05
RTF1Q92541 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RTF1Q92541 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
RTF1Q92541 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.62■■□□□ 1.05
RTF1Q92541 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC21.62■■□□□ 1.05
RTF1Q92541 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.62■■□□□ 1.05
RTF1Q92541 AC012313.1-201ENST00000593393 3059 ntBASIC21.62■■□□□ 1.05
RTF1Q92541 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.62■■□□□ 1.05
RTF1Q92541 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC21.62■■□□□ 1.05
RTF1Q92541 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC21.62■■□□□ 1.05
RTF1Q92541 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC21.62■■□□□ 1.05
RTF1Q92541 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21.62■■□□□ 1.05
RTF1Q92541 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.62■■□□□ 1.05
RTF1Q92541 RARRES2P9-201ENST00000565168 469 ntBASIC21.62■■□□□ 1.05
RTF1Q92541 AC020765.3-201ENST00000613051 740 ntBASIC21.62■■□□□ 1.05
RTF1Q92541 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.62■■□□□ 1.05
RTF1Q92541 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RTF1Q92541 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
RTF1Q92541 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.62■■□□□ 1.05
RTF1Q92541 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
RTF1Q92541 AC006538.1-201ENST00000567905 1585 ntBASIC21.61■■□□□ 1.05
RTF1Q92541 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
RTF1Q92541 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 FOXO1B-201ENST00000504678 1527 ntBASIC21.61■■□□□ 1.05
RTF1Q92541 AMT-206ENST00000458307 1860 ntTSL 2 BASIC21.61■■□□□ 1.05
RTF1Q92541 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.61■■□□□ 1.05
RTF1Q92541 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.61■■□□□ 1.05
RTF1Q92541 MIR943-201ENST00000401286 94 ntBASIC21.61■■□□□ 1.05
RTF1Q92541 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC21.61■■□□□ 1.05
RTF1Q92541 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.61■■□□□ 1.05
RTF1Q92541 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC21.61■■□□□ 1.05
RTF1Q92541 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.61■■□□□ 1.05
RTF1Q92541 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.61■■□□□ 1.05
RTF1Q92541 MIR4453-201ENST00000584019 89 ntBASIC21.61■■□□□ 1.05
RTF1Q92541 SPTSSB-204ENST00000617024 1292 ntBASIC21.61■■□□□ 1.05
RTF1Q92541 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC21.61■■□□□ 1.05
RTF1Q92541 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC21.61■■□□□ 1.05
RTF1Q92541 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
RTF1Q92541 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
RTF1Q92541 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RTF1Q92541 AL031731.1-201ENST00000642131 2094 ntBASIC21.6■■□□□ 1.05
RTF1Q92541 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.6■■□□□ 1.05
RTF1Q92541 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 LTB4R2-202ENST00000528054 3092 ntBASIC21.6■■□□□ 1.05
RTF1Q92541 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC21.6■■□□□ 1.05
RTF1Q92541 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
RTF1Q92541 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
RTF1Q92541 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.6■■□□□ 1.05
RTF1Q92541 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.6■■□□□ 1.05
RTF1Q92541 AC140878.1-201ENST00000565277 250 ntBASIC21.6■■□□□ 1.05
RTF1Q92541 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
RTF1Q92541 AC018529.1-201ENST00000613063 361 ntBASIC21.6■■□□□ 1.05
RTF1Q92541 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 GPAA1P2-202ENST00000606848 1787 ntBASIC21.6■■□□□ 1.05
RTF1Q92541 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms