Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AL590560.3-201ENST00000623350 461 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AF228730.6-201ENST00000641497 218 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AC084121.3-201ENST00000641716 218 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AC105233.6-201ENST00000642093 218 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 AC106820.2-201ENST00000563775 3264 ntBASIC16.13■□□□□ 0.17
LMX1AQ8TE12 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.13■□□□□ 0.17
LMX1AQ8TE12 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 AC098859.1-201ENST00000502915 1238 ntBASIC16.13■□□□□ 0.17
LMX1AQ8TE12 AP002490.2-201ENST00000524791 560 ntBASIC16.13■□□□□ 0.17
LMX1AQ8TE12 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 AL138828.2-201ENST00000615812 383 ntBASIC16.13■□□□□ 0.17
LMX1AQ8TE12 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1AQ8TE12 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 FAM220BP-201ENST00000377689 816 ntBASIC16.12■□□□□ 0.17
LMX1AQ8TE12 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 AL035456.1-201ENST00000456064 1369 ntBASIC16.12■□□□□ 0.17
LMX1AQ8TE12 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LMX1AQ8TE12 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms