Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 BTBD6P1-201ENST00000412176 1267 ntBASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 NAA38-207ENST00000576861 556 ntTSL 3 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 MIR4706-201ENST00000582134 82 ntBASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC1BQ8NDV3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 SPDYE17-201ENST00000412399 783 ntBASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 AP001889.1-201ENST00000525414 633 ntBASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 AC079316.1-201ENST00000548397 411 ntBASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 AC020765.3-201ENST00000613051 740 ntBASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 CU634019.7-201ENST00000624153 1185 ntBASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 FP236241.2-201ENST00000624906 1185 ntBASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 REXO1L11P-201ENST00000620964 1927 ntBASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC1BQ8NDV3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 APOA1-205ENST00000375329 927 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 TIMM17BP1-201ENST00000545713 516 ntBASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 AC105129.2-201ENST00000559536 390 ntBASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 HTR7P1-202ENST00000624664 4411 ntBASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMC1BQ8NDV3 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms